Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 RPS27P16-201ENST00000425758 201 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 AL135790.2-201ENST00000437701 267 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC0.11□□□□□ -2.39
TFF3Q07654 snoU13.9-201ENST00000458927 103 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 RPS26P55-201ENST00000471178 356 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 APOOP3-201ENST00000536787 586 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.11□□□□□ -2.39
TFF3Q07654 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.11□□□□□ -2.39
TFF3Q07654 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.11□□□□□ -2.39
TFF3Q07654 AC012669.1-201ENST00000603209 283 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 AC010900.2-201ENST00000604508 210 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 AL021997.1-201ENST00000605757 193 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 MIR8074-201ENST00000615081 81 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 AC073569.3-201ENST00000619055 682 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 AC097372.4-201ENST00000625025 466 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 MIR6759-201ENST00000638110 65 ntBASIC0.11□□□□□ -2.39
TFF3Q07654 TPTE2P4-201ENST00000258589 1605 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
TFF3Q07654 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.1□□□□□ -2.39
TFF3Q07654 RNU6-271P-201ENST00000363858 105 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 RNU6-35P-201ENST00000384530 107 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 MIR329-2-201ENST00000385029 84 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 UBE2V1P4-201ENST00000425374 344 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 MTND4LP3-201ENST00000468320 276 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 RPL21P47-201ENST00000483696 477 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.1□□□□□ -2.39
TFF3Q07654 RNA5SP134-201ENST00000516492 96 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.1□□□□□ -2.39
TFF3Q07654 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.1□□□□□ -2.39
TFF3Q07654 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.1□□□□□ -2.39
TFF3Q07654 AC115085.1-201ENST00000588924 229 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 AL391597.1-201ENST00000618707 694 ntBASIC0.1□□□□□ -2.39
TFF3Q07654 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.09□□□□□ -2.4
TFF3Q07654 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.09□□□□□ -2.4
TFF3Q07654 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.09□□□□□ -2.4
TFF3Q07654 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.09□□□□□ -2.4
TFF3Q07654 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.09□□□□□ -2.4
TFF3Q07654 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.09□□□□□ -2.4
TFF3Q07654 AP001025.1-201ENST00000486139 332 ntBASIC0.09□□□□□ -2.4
TFF3Q07654 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.09□□□□□ -2.4
TFF3Q07654 AL078604.3-201ENST00000615580 211 ntBASIC0.09□□□□□ -2.4
TFF3Q07654 MIR6134-201ENST00000617606 109 ntBASIC0.09□□□□□ -2.4
TFF3Q07654 AC010099.3-201ENST00000423896 409 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 PNRC2P1-201ENST00000423940 420 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 RPL36AP53-201ENST00000432891 316 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 RPS25P9-201ENST00000435591 252 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 MTND5P14-201ENST00000441481 1267 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 MTND4LP24-201ENST00000572277 291 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.08□□□□□ -2.4
TFF3Q07654 PCNAP1-202ENST00000595299 752 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 AC073544.2-201ENST00000601155 540 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 AC146944.4-201ENST00000602697 718 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.08□□□□□ -2.4
TFF3Q07654 MIR6516-201ENST00000630554 81 ntBASIC0.08□□□□□ -2.4
TFF3Q07654 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.08□□□□□ -2.4
TFF3Q07654 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
TFF3Q07654 RNU6-1083P-201ENST00000384022 107 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
TFF3Q07654 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.07□□□□□ -2.4
TFF3Q07654 USP9YP26-201ENST00000421008 661 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 USP9YP18-201ENST00000425912 695 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 USP9YP24-201ENST00000434374 697 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 USP9YP17-201ENST00000444617 696 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 RNU7-27P-201ENST00000459281 62 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 RNA5SP57-201ENST00000459463 123 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
TFF3Q07654 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 AL356432.3-201ENST00000568952 465 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 AL022345.2-201ENST00000606307 135 ntBASIC0.07□□□□□ -2.4
TFF3Q07654 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.07□□□□□ -2.4
TFF3Q07654 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
TFF3Q07654 AC005832.2-201ENST00000538921 1430 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 RNU6-270P-201ENST00000364131 105 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 SNORA4.1-201ENST00000364263 144 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 RNU6-110P-201ENST00000384508 104 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
TFF3Q07654 RPS26P5-201ENST00000418544 335 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.06□□□□□ -2.4
TFF3Q07654 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.06□□□□□ -2.4
TFF3Q07654 RPL23AP95-201ENST00000426806 265 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AL031663.1-201ENST00000437445 219 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 RPEP5-201ENST00000441137 268 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 TRBVB-201ENST00000477100 408 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.06□□□□□ -2.4
TFF3Q07654 AC016065.2-201ENST00000514530 444 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AC018659.1-201ENST00000551083 169 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 EEF1B2P4-201ENST00000551398 348 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AC008088.1-201ENST00000580993 280 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 MIR4768-201ENST00000585270 74 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.06□□□□□ -2.4
TFF3Q07654 AC008121.1-201ENST00000603244 268 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AC069294.1-201ENST00000608397 350 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 AC009509.4-201ENST00000619202 509 ntBASIC0.06□□□□□ -2.4
TFF3Q07654 FARSBP1-201ENST00000435808 1778 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms