Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-56P-201ENST00000516986 93 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.21□□□□□ -1.9
HDAC4P56524 FO082796.1-201ENST00000523795 183 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 MIR5583-1-201ENST00000580941 59 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 MIR4424-201ENST00000585257 86 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 BNIP3P9-201ENST00000603714 553 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 WT1-AS_8.1-201ENST00000615200 275 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 RN7SL853P-201ENST00000617250 223 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HDAC4P56524 AC093831.2-201ENST00000624393 3427 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
HDAC4P56524 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HDAC4P56524 AC091564.4-201ENST00000533934 2194 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 HSPA8P4-201ENST00000511877 1920 ntBASIC3.21□□□□□ -1.9
HDAC4P56524 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HDAC4P56524 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDAC4P56524 MTND5P19-201ENST00000424872 1794 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AL355596.1-201ENST00000565399 3996 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDAC4P56524 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDAC4P56524 RN7SKP58-201ENST00000411010 305 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.2□□□□□ -1.9
HDAC4P56524 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.2□□□□□ -1.9
HDAC4P56524 AL592045.1-201ENST00000429867 352 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 GPM6BP2-201ENST00000432046 144 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 GPM6BP1-201ENST00000446387 144 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.2□□□□□ -1.9
HDAC4P56524 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.2□□□□□ -1.9
HDAC4P56524 RN7SL20P-201ENST00000488827 297 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.2□□□□□ -1.9
HDAC4P56524 EIF4EP3-201ENST00000498782 656 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.2□□□□□ -1.9
HDAC4P56524 RNU6-1178P-201ENST00000516674 107 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 RNU6-143P-201ENST00000516942 93 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 SNORA31.21-201ENST00000517180 77 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 HIF1AP1-201ENST00000553642 175 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AC068135.2-201ENST00000569293 1028 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 LARP7P3-201ENST00000579888 337 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 MIR4325-201ENST00000583049 90 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.2□□□□□ -1.9
HDAC4P56524 AC136601.2-201ENST00000604356 474 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AL020991.1-201ENST00000612314 373 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HDAC4P56524 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 uc_338.11-201ENST00000619132 160 ntBASIC3.2□□□□□ -1.9
HDAC4P56524 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.2□□□□□ -1.9
HDAC4P56524 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.2□□□□□ -1.9
HDAC4P56524 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.2□□□□□ -1.9
HDAC4P56524 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.2□□□□□ -1.9
HDAC4P56524 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDAC4P56524 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.2□□□□□ -1.9
HDAC4P56524 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HDAC4P56524 ASNSP3-201ENST00000451989 1306 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC093536.2-201ENST00000565257 1406 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HDAC4P56524 AL359693.1-201ENST00000614959 2407 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 RNU6-270P-201ENST00000364131 105 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 Y_RNA.303-201ENST00000364998 94 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 RNU6-217P-201ENST00000384164 104 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 RNU6-140P-201ENST00000384566 108 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 SNORA46-201ENST00000384762 135 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 CISD1P1-201ENST00000393907 327 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 EEF1A1P40-201ENST00000412883 573 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 BMS1P22-201ENST00000414726 313 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.19□□□□□ -1.9
HDAC4P56524 OR6C66P-201ENST00000414917 930 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 SNRPEP10-201ENST00000420249 274 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.19□□□□□ -1.9
HDAC4P56524 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.19□□□□□ -1.9
HDAC4P56524 FABP5P15-201ENST00000453566 214 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 RPS29P12-201ENST00000460178 152 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 RN7SL75P-201ENST00000461926 281 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 CCDC34P1-201ENST00000507441 517 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.19□□□□□ -1.9
HDAC4P56524 MIR15A-201ENST00000607334 83 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC004852.3-201ENST00000614131 326 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HDAC4P56524 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.19□□□□□ -1.9
HDAC4P56524 AL512643.1-201ENST00000635735 524 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 MIR3662-201ENST00000637030 95 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HDAC4P56524 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HDAC4P56524 AC004520.1-201ENST00000608362 1413 ntBASIC3.19□□□□□ -1.9
HDAC4P56524 AC010680.1-201ENST00000590024 3590 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HDAC4P56524 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.18□□□□□ -1.9
HDAC4P56524 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HDAC4P56524 RNU6-1287P-201ENST00000362914 107 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 RNA5SP374-201ENST00000362939 125 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 Y_RNA.88-201ENST00000363029 99 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 RNY3P14-201ENST00000384309 102 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 RNU6-1060P-201ENST00000384664 107 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 MIR514A2-201ENST00000385131 88 ntBASIC3.18□□□□□ -1.9
HDAC4P56524 MIR514A3-201ENST00000385132 88 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms