Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU1-72P-201ENST00000362976 153 ntBASIC1.99□□□□□ -2.09
RFX3P48380 RNU6-288P-201ENST00000363690 104 ntBASIC1.99□□□□□ -2.09
RFX3P48380 RNU6-960P-201ENST00000364056 120 ntBASIC1.99□□□□□ -2.09
RFX3P48380 RNU5E-6P-201ENST00000365574 115 ntBASIC1.99□□□□□ -2.09
RFX3P48380 MIR1261-201ENST00000408659 82 ntBASIC1.99□□□□□ -2.09
RFX3P48380 U3.40-201ENST00000408706 208 ntBASIC1.99□□□□□ -2.09
RFX3P48380 RPS12P24-201ENST00000412619 387 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.99□□□□□ -2.09
RFX3P48380 AC118469.1-201ENST00000442943 488 ntBASIC1.99□□□□□ -2.09
RFX3P48380 FTH1P25-201ENST00000447665 469 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AL353705.4-201ENST00000449661 238 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.99□□□□□ -2.09
RFX3P48380 RPL36AP48-201ENST00000485521 314 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 YWHAEP4-201ENST00000505390 198 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC116655.1-201ENST00000508324 901 ntBASIC1.99□□□□□ -2.09
RFX3P48380 MRPS33P3-201ENST00000513456 322 ntBASIC1.99□□□□□ -2.09
RFX3P48380 RNU6-1092P-201ENST00000516955 87 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.99□□□□□ -2.09
RFX3P48380 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.99□□□□□ -2.09
RFX3P48380 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AC012213.3-201ENST00000577199 777 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.99□□□□□ -2.09
RFX3P48380 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.99□□□□□ -2.09
RFX3P48380 AP001981.2-201ENST00000603241 418 ntBASIC1.99□□□□□ -2.09
RFX3P48380 MTCYBP22-201ENST00000603788 447 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AL359999.1-201ENST00000604513 294 ntBASIC1.99□□□□□ -2.09
RFX3P48380 MIR7844-201ENST00000616161 122 ntBASIC1.99□□□□□ -2.09
RFX3P48380 MIR6134-201ENST00000617606 109 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC010378.1-201ENST00000619270 362 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AL031601.2-202ENST00000622650 282 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC244517.12-201ENST00000623581 663 ntBASIC1.99□□□□□ -2.09
RFX3P48380 AC007671.2-201ENST00000637344 619 ntBASIC1.99□□□□□ -2.09
RFX3P48380 CDC27P3-201ENST00000635418 1910 ntBASIC1.99□□□□□ -2.09
RFX3P48380 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
RFX3P48380 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.99□□□□□ -2.09
RFX3P48380 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
RFX3P48380 RNU5A-2P-201ENST00000384337 116 ntBASIC1.98□□□□□ -2.09
RFX3P48380 RNU6-809P-201ENST00000384461 107 ntBASIC1.98□□□□□ -2.09
RFX3P48380 SNORA3.2-201ENST00000408221 125 ntBASIC1.98□□□□□ -2.09
RFX3P48380 RN7SKP32-201ENST00000410167 303 ntBASIC1.98□□□□□ -2.09
RFX3P48380 RN7SKP158-201ENST00000410453 326 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.98□□□□□ -2.09
RFX3P48380 Z98742.3-201ENST00000418637 326 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.98□□□□□ -2.09
RFX3P48380 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.98□□□□□ -2.09
RFX3P48380 AC097463.2-201ENST00000421074 142 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AL365184.2-201ENST00000431139 435 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AL591704.1-201ENST00000432574 275 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC016691.1-201ENST00000441321 413 ntBASIC1.98□□□□□ -2.09
RFX3P48380 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.98□□□□□ -2.09
RFX3P48380 SSXP1-201ENST00000453640 473 ntBASIC1.98□□□□□ -2.09
RFX3P48380 MTND1P3-201ENST00000484956 952 ntBASIC1.98□□□□□ -2.09
RFX3P48380 RNU6-677P-201ENST00000516914 101 ntBASIC1.98□□□□□ -2.09
RFX3P48380 ACA59.2-201ENST00000517061 156 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC107934.1-201ENST00000522215 217 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC084851.1-201ENST00000529105 249 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC118273.2-201ENST00000532092 465 ntBASIC1.98□□□□□ -2.09
RFX3P48380 CYCSP26-201ENST00000534107 320 ntBASIC1.98□□□□□ -2.09
RFX3P48380 ARL2BPP2-201ENST00000550907 489 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.98□□□□□ -2.09
RFX3P48380 AP000860.1-201ENST00000605250 559 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC068276.1-201ENST00000605793 379 ntBASIC1.98□□□□□ -2.09
RFX3P48380 AC103710.2-201ENST00000609912 942 ntBASIC1.98□□□□□ -2.09
RFX3P48380 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
RFX3P48380 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.98□□□□□ -2.09
RFX3P48380 MIR6715A-201ENST00000615929 79 ntBASIC1.98□□□□□ -2.09
RFX3P48380 MTND4P1-201ENST00000457501 1466 ntBASIC1.98□□□□□ -2.09
RFX3P48380 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.98□□□□□ -2.09
RFX3P48380 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.98□□□□□ -2.09
RFX3P48380 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.97□□□□□ -2.09
RFX3P48380 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
RFX3P48380 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.97□□□□□ -2.09
RFX3P48380 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
RFX3P48380 OR56A5-201ENST00000340110 738 ntBASIC1.97□□□□□ -2.09
RFX3P48380 RNY4P16-201ENST00000364768 94 ntBASIC1.97□□□□□ -2.09
RFX3P48380 SMIM11P1-201ENST00000369586 178 ntBASIC1.97□□□□□ -2.09
RFX3P48380 RNU6-748P-201ENST00000384648 107 ntBASIC1.97□□□□□ -2.09
RFX3P48380 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
RFX3P48380 AL133475.1-201ENST00000404414 305 ntBASIC1.97□□□□□ -2.09
RFX3P48380 FCF1P10-201ENST00000407590 479 ntBASIC1.97□□□□□ -2.09
RFX3P48380 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.97□□□□□ -2.09
RFX3P48380 RNU2-36P-201ENST00000410361 191 ntBASIC1.97□□□□□ -2.09
RFX3P48380 AC005005.2-201ENST00000420779 380 ntBASIC1.97□□□□□ -2.09
RFX3P48380 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.97□□□□□ -2.09
RFX3P48380 AC137499.1-201ENST00000427602 88 ntBASIC1.97□□□□□ -2.09
RFX3P48380 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.97□□□□□ -2.09
RFX3P48380 AL512286.1-201ENST00000439244 400 ntBASIC1.97□□□□□ -2.09
RFX3P48380 RPS15AP9-201ENST00000439856 381 ntBASIC1.97□□□□□ -2.09
RFX3P48380 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
RFX3P48380 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
RFX3P48380 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.97□□□□□ -2.09
RFX3P48380 AL441985.1-201ENST00000457727 251 ntBASIC1.97□□□□□ -2.09
RFX3P48380 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.97□□□□□ -2.09
RFX3P48380 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms