Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC103987.3-201ENST00000582071 292 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 NRBF2P1-201ENST00000587407 859 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 AC109347.2-201ENST00000610220 349 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 HULC.1-201ENST00000612720 240 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 SCARNA17.4-201ENST00000614296 143 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.51□□□□□ -2.01
TNFRSF4P43489 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.51□□□□□ -2.01
TNFRSF4P43489 MTND5P27-201ENST00000428871 1720 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
TNFRSF4P43489 AC004520.1-201ENST00000608362 1413 ntBASIC2.51□□□□□ -2.01
TNFRSF4P43489 AC016717.2-201ENST00000609089 5141 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 RNU6-461P-201ENST00000364195 107 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 RNU4-75P-201ENST00000364621 146 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 SNORA20.2-201ENST00000383922 131 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
TNFRSF4P43489 RNU2-25P-201ENST00000411041 191 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AL589823.1-201ENST00000429577 183 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AL356320.1-201ENST00000429616 163 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 DLGAP5P1-201ENST00000430307 464 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 RPL23AP30-201ENST00000432419 501 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 OR2B8P-201ENST00000432841 938 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 RPS24P1-201ENST00000438550 371 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC010095.1-201ENST00000443543 144 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 CACYBPP2-201ENST00000453625 678 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC107626.1-201ENST00000471084 183 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC234781.5-201ENST00000508429 271 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 RNU6-914P-201ENST00000516749 109 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 SNORA31.18-201ENST00000517043 134 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 RNU6-1183P-201ENST00000517054 60 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AP003392.2-201ENST00000527269 208 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 HSPE1P20-201ENST00000538133 289 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 MIR4782-201ENST00000577987 79 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 MIR3167-201ENST00000579623 85 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC004223.2-201ENST00000590309 544 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC087683.1-201ENST00000591187 441 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 MIR98-201ENST00000606724 119 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.5□□□□□ -2.01
TNFRSF4P43489 AL451064.1-201ENST00000607718 471 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC104073.3-201ENST00000610942 955 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AL589743.7-201ENST00000612637 233 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 AC072046.2-201ENST00000618366 268 ntBASIC2.5□□□□□ -2.01
TNFRSF4P43489 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
TNFRSF4P43489 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
TNFRSF4P43489 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
TNFRSF4P43489 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-623P-201ENST00000363143 105 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-1083P-201ENST00000384022 107 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-39P-201ENST00000384344 107 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 Y_RNA.534-201ENST00000384599 112 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNA5SP210-201ENST00000391034 120 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNA5SP492-201ENST00000411330 114 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 USP9YP6-201ENST00000413550 854 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC092809.3-201ENST00000415453 231 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AL161651.1-201ENST00000440882 223 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC233279.1-201ENST00000455300 423 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 TPT1P7-201ENST00000458300 517 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 GZMAP1-201ENST00000503054 631 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 Y_RNA.689-201ENST00000516589 107 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-405P-201ENST00000516637 110 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-430P-201ENST00000517078 107 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 RNU6-1315P-201ENST00000517187 99 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AL121821.2-201ENST00000556081 394 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC090616.3-201ENST00000582184 217 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AL391813.1-201ENST00000603098 260 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC012119.1-201ENST00000603184 222 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC091805.2-201ENST00000603848 235 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC091834.1-201ENST00000614543 472 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 LRRC77P-213ENST00000637727 880 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 AC068137.4-201ENST00000638485 296 ntBASIC2.49□□□□□ -2.01
TNFRSF4P43489 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
TNFRSF4P43489 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TNFRSF4P43489 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms