Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC025165.5-201ENST00000602802 578 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 AL670379.4-201ENST00000605279 254 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC008945.2-201ENST00000606056 604 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL354950.2-201ENST00000617939 290 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC010338.1-201ENST00000621823 717 ntBASIC2.61□□□□□ -1.99
SOX3P41225 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.61□□□□□ -1.99
SOX3P41225 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.61□□□□□ -1.99
SOX3P41225 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 Y_RNA.111-201ENST00000363248 100 ntBASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-884P-201ENST00000363889 107 ntBASIC2.6□□□□□ -1.99
SOX3P41225 Y_RNA.255-201ENST00000364581 97 ntBASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-996P-201ENST00000365438 107 ntBASIC2.6□□□□□ -1.99
SOX3P41225 MIR512-1-201ENST00000384913 84 ntBASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-550P-201ENST00000391057 101 ntBASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-903P-201ENST00000391270 109 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.6□□□□□ -1.99
SOX3P41225 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.6□□□□□ -1.99
SOX3P41225 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-261P-201ENST00000459506 102 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC139453.3-201ENST00000493276 369 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.6□□□□□ -1.99
SOX3P41225 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 RN7SKP132-201ENST00000516001 208 ntBASIC2.6□□□□□ -1.99
SOX3P41225 RNU6-1315P-201ENST00000517187 99 ntBASIC2.6□□□□□ -1.99
SOX3P41225 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 OR5AQ1P-201ENST00000527596 927 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 AK6P1-201ENST00000540219 478 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AL157687.1-201ENST00000554853 619 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 AC068135.2-201ENST00000569293 1028 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX3P41225 ELOCP29-201ENST00000588193 334 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC007621.1-201ENST00000604544 437 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC126118.1-201ENST00000607744 628 ntBASIC2.6□□□□□ -1.99
SOX3P41225 AC093788.1-201ENST00000609356 927 ntBASIC2.6□□□□□ -1.99
SOX3P41225 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 AC073308.1-201ENST00000623696 305 ntBASIC2.6□□□□□ -1.99
SOX3P41225 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
SOX3P41225 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SOX3P41225 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.59□□□□□ -1.99
SOX3P41225 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.59□□□□□ -1.99
SOX3P41225 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SOX3P41225 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SOX3P41225 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SOX3P41225 Y_RNA.9-201ENST00000362354 101 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNU6-778P-201ENST00000363269 103 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNU6-371P-201ENST00000364283 108 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNU6-198P-201ENST00000384258 104 ntBASIC2.59□□□□□ -1.99
SOX3P41225 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SOX3P41225 UBE2V1P2-201ENST00000397758 440 ntBASIC2.59□□□□□ -1.99
SOX3P41225 CIR1P3-201ENST00000405137 479 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNA5SP111-201ENST00000411386 101 ntBASIC2.59□□□□□ -1.99
SOX3P41225 USP9YP18-201ENST00000425912 695 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX3P41225 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.59□□□□□ -1.99
SOX3P41225 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX3P41225 MRPL50P4-201ENST00000446432 475 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC104058.1-201ENST00000448028 297 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC073415.1-201ENST00000449240 153 ntBASIC2.59□□□□□ -1.99
SOX3P41225 CACYBPP2-201ENST00000453625 678 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX3P41225 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX3P41225 AC103975.1-201ENST00000482506 483 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC233702.1-201ENST00000482905 502 ntBASIC2.59□□□□□ -1.99
SOX3P41225 EIF4EP3-201ENST00000498782 656 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC011352.1-201ENST00000512300 793 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNU6-703P-201ENST00000516946 107 ntBASIC2.59□□□□□ -1.99
SOX3P41225 RNU6-835P-201ENST00000516974 104 ntBASIC2.59□□□□□ -1.99
SOX3P41225 MTND1P5-201ENST00000517906 940 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC009902.1-201ENST00000519351 183 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX3P41225 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SOX3P41225 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX3P41225 AC027807.1-201ENST00000559921 996 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX3P41225 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.59□□□□□ -1.99
SOX3P41225 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX3P41225 BNIP3P30-201ENST00000601184 574 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AL138889.2-201ENST00000603883 242 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC090115.4-201ENST00000609970 188 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AL359198.2-201ENST00000611836 194 ntBASIC2.59□□□□□ -1.99
SOX3P41225 AC024940.5-201ENST00000622889 474 ntBASIC2.59□□□□□ -1.99
SOX3P41225 MIR1321-201ENST00000637766 79 ntBASIC2.59□□□□□ -1.99
SOX3P41225 HSPA8P4-201ENST00000511877 1920 ntBASIC2.59□□□□□ -1.99
SOX3P41225 CKAP2P1-201ENST00000555477 2049 ntBASIC2.59□□□□□ -2
SOX3P41225 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
SOX3P41225 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.58□□□□□ -2
SOX3P41225 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.58□□□□□ -2
SOX3P41225 RNY4P14-201ENST00000363656 96 ntBASIC2.58□□□□□ -2
SOX3P41225 SNORA69-201ENST00000383895 132 ntBASIC2.58□□□□□ -2
SOX3P41225 RNU6-116P-201ENST00000384042 109 ntBASIC2.58□□□□□ -2
SOX3P41225 RNU6-483P-201ENST00000384088 108 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms