Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR491-201ENST00000384877 84 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-1050P-201ENST00000410388 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AL591419.1-201ENST00000427423 339 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 USP9YP30-201ENST00000430729 455 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC011742.1-201ENST00000431448 434 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD3P31249 AL356535.1-201ENST00000440335 398 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD3P31249 ELOCP24-201ENST00000456370 334 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AL049830.2-201ENST00000480072 201 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC011005.2-201ENST00000487324 359 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD3P31249 MTCYBP40-201ENST00000509390 1135 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-120P-201ENST00000516077 103 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 ATP5F1P5-201ENST00000526403 760 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXD3P31249 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXD3P31249 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD3P31249 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 AC100830.2-201ENST00000581636 240 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 OR1M4P-201ENST00000589199 287 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 RNU6-6P-201ENST00000606623 107 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 U3.45-201ENST00000607547 219 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC009229.3-201ENST00000608056 282 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AL161423.1-201ENST00000613700 262 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC040896.1-201ENST00000613819 479 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD3P31249 AC098657.3-201ENST00000620434 263 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 AC092608.2-201ENST00000624427 218 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 AL732372.2-225ENST00000642124 456 ntBASIC2.93□□□□□ -1.94
HOXD3P31249 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.93□□□□□ -1.94
HOXD3P31249 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD3P31249 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD3P31249 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD3P31249 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD3P31249 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
HOXD3P31249 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD3P31249 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 SNORD62.1-201ENST00000362541 86 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 Y_RNA.197-201ENST00000364004 102 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 Y_RNA.445-201ENST00000384168 102 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 RNU6-331P-201ENST00000384724 107 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 MIR34B-201ENST00000385076 84 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AL138878.1-201ENST00000405131 347 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 Y_RNA.594-201ENST00000410373 140 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD3P31249 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD3P31249 AC092047.1-201ENST00000424997 240 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 ARF4P2-201ENST00000430209 526 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC236972.1-201ENST00000433225 199 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 NDUFB4P6-201ENST00000436819 366 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 RPL12P25-201ENST00000455592 494 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 MIR2053-201ENST00000459295 91 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 snoU109.2-201ENST00000459316 135 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 Y_RNA.631-201ENST00000459607 101 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 RPS23P3-201ENST00000470993 430 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 HMGB1P30-201ENST00000492455 606 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC026801.1-201ENST00000497178 464 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 RNU6-1016P-201ENST00000516689 94 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 SCARNA14-201ENST00000516903 136 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 SNORA31.19-201ENST00000517079 126 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC007991.1-201ENST00000522680 631 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD3P31249 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 MIR4474-201ENST00000579189 78 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 MIR3922-201ENST00000585192 84 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXD3P31249 AC078795.3-201ENST00000602913 472 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AL360085.1-201ENST00000604713 532 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC007938.3-201ENST00000604965 623 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 AC018462.2-201ENST00000605375 395 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 PART1_1.1-201ENST00000611761 217 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 RMST_4.1-201ENST00000616886 107 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 AC103858.2-201ENST00000621471 543 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 uc_338.22-201ENST00000622722 187 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.92□□□□□ -1.94
HOXD3P31249 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXD3P31249 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXD3P31249 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
HOXD3P31249 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXD3P31249 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC2.91□□□□□ -1.94
HOXD3P31249 MFSD8-236ENST00000641509 4050 ntBASIC2.91□□□□□ -1.94
HOXD3P31249 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms