Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.813-201ENST00000364639 102 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 RNU6-1303P-201ENST00000364841 107 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 Y_RNA.333-201ENST00000365274 102 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 MIR184-201ENST00000384962 84 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 EIF4E2P1-201ENST00000393781 255 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 RNU2-33P-201ENST00000410344 192 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.78□□□□□ -1.8
SMARCA1P28370 MTND4P28-201ENST00000426217 387 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 HMGB1P18-201ENST00000438801 619 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.78□□□□□ -1.8
SMARCA1P28370 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.78□□□□□ -1.8
SMARCA1P28370 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.78□□□□□ -1.8
SMARCA1P28370 AC087884.1-201ENST00000469738 328 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 RPL7P43-201ENST00000478876 753 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 RNU6-277P-201ENST00000516272 106 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 Y_RNA.691-201ENST00000516611 103 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.78□□□□□ -1.8
SMARCA1P28370 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.78□□□□□ -1.8
SMARCA1P28370 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.78□□□□□ -1.8
SMARCA1P28370 RMST_7.1-201ENST00000621935 268 ntBASIC3.78□□□□□ -1.8
SMARCA1P28370 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SMARCA1P28370 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SMARCA1P28370 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
SMARCA1P28370 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
SMARCA1P28370 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SMARCA1P28370 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
SMARCA1P28370 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 AL355596.1-201ENST00000565399 3996 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 AC007496.3-201ENST00000624987 3443 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.77□□□□□ -1.81
SMARCA1P28370 Y_RNA.11-201ENST00000362375 109 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 Y_RNA.245-201ENST00000364493 95 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.77□□□□□ -1.81
SMARCA1P28370 AL357075.1-201ENST00000404107 726 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.77□□□□□ -1.81
SMARCA1P28370 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.77□□□□□ -1.81
SMARCA1P28370 NDUFA5P4-201ENST00000436704 385 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 CECR9-201ENST00000453421 199 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RPL37P6-201ENST00000460682 294 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 AC109925.1-201ENST00000478069 331 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RPL30P14-201ENST00000482744 348 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RPS15AP34-201ENST00000487776 387 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 AC022493.1-201ENST00000492984 337 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RNU6-1282P-201ENST00000516735 96 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RNU6-1088P-201ENST00000516850 104 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 RNU6-143P-201ENST00000516942 93 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.77□□□□□ -1.81
SMARCA1P28370 ATP5F1P5-201ENST00000526403 760 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 AC093027.1-201ENST00000546698 429 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 MIR1273C-201ENST00000578669 77 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 MIR2682-201ENST00000580305 110 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.77□□□□□ -1.81
SMARCA1P28370 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 MIR7112-201ENST00000616126 65 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.77□□□□□ -1.81
SMARCA1P28370 AC007785.2-201ENST00000598627 1916 ntBASIC3.77□□□□□ -1.81
SMARCA1P28370 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SMARCA1P28370 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SMARCA1P28370 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
SMARCA1P28370 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SMARCA1P28370 RNU6-741P-201ENST00000383889 107 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 SNORA75B-201ENST00000384053 137 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 Y_RNA.474-201ENST00000384341 102 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 Y_RNA.535-201ENST00000384612 99 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 SNORA48.8-201ENST00000391324 134 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 RPLP0P7-201ENST00000416050 667 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 RPL31P12-201ENST00000422587 358 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 GPM6BP2-201ENST00000432046 144 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.76□□□□□ -1.81
SMARCA1P28370 GPM6BP1-201ENST00000446387 144 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.76□□□□□ -1.81
SMARCA1P28370 AC117503.1-201ENST00000472241 394 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.76□□□□□ -1.81
SMARCA1P28370 MTND3P25-201ENST00000509243 135 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 SNORA14.1-201ENST00000516113 141 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 Y_RNA.675-201ENST00000516389 149 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 RNA5SP290-201ENST00000517133 127 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 RNU6-1315P-201ENST00000517187 99 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.76□□□□□ -1.81
SMARCA1P28370 AC011602.1-201ENST00000546484 331 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.76□□□□□ -1.81
SMARCA1P28370 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.76□□□□□ -1.81
SMARCA1P28370 TRAV28-201ENST00000557548 323 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AC005668.1-201ENST00000571142 476 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 MIR5680-201ENST00000577577 84 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 MIR5004-201ENST00000579078 107 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 MIR3672-201ENST00000584290 82 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 MIR548AC-201ENST00000585049 88 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AL670379.10-201ENST00000604330 253 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AL670379.9-201ENST00000605428 253 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 AC104237.2-201ENST00000612456 443 ntBASIC3.76□□□□□ -1.81
SMARCA1P28370 FAM157A-202ENST00000615155 405 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms