Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.58□□□□□ -2.32
CCDC88BA6NC98 AC104763.3-201ENST00000613765 618 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 U1.36-201ENST00000620684 176 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 AC005832.2-201ENST00000538921 1430 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 MIR100-201ENST00000385259 80 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 RNU6-712P-201ENST00000410558 100 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 snoU13.9-201ENST00000458927 103 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 RPL30P7-201ENST00000479312 323 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 RNU6-1308P-201ENST00000516817 103 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AC006518.2-201ENST00000542513 940 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AC021739.1-201ENST00000559631 174 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 MIR8074-201ENST00000615081 81 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 MIR6130-201ENST00000619419 109 ntBASIC0.57□□□□□ -2.32
CCDC88BA6NC98 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC88BA6NC98 RNU6-105P-201ENST00000363909 104 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 U6atac.2-201ENST00000408644 118 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AL589880.1-201ENST00000448271 287 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 MTND5P8-201ENST00000449817 1083 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 SCARNA16.2-201ENST00000516520 172 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AC136628.3-201ENST00000521868 290 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 RAB11AP2-201ENST00000545905 639 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AL365204.3-201ENST00000612448 685 ntBASIC0.56□□□□□ -2.32
CCDC88BA6NC98 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.55□□□□□ -2.32
CCDC88BA6NC98 SNORD65-201ENST00000391079 73 ntBASIC0.55□□□□□ -2.32
CCDC88BA6NC98 AC006461.1-201ENST00000412637 326 ntBASIC0.55□□□□□ -2.32
CCDC88BA6NC98 RNU4-77P-201ENST00000516692 156 ntBASIC0.55□□□□□ -2.32
CCDC88BA6NC98 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.55□□□□□ -2.32
CCDC88BA6NC98 AL356432.3-201ENST00000568952 465 ntBASIC0.55□□□□□ -2.32
CCDC88BA6NC98 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.55□□□□□ -2.32
CCDC88BA6NC98 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CCDC88BA6NC98 RNU6-989P-201ENST00000362756 107 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 AC009310.1-201ENST00000414414 451 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.54□□□□□ -2.32
CCDC88BA6NC98 RNU6-319P-201ENST00000516025 108 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.54□□□□□ -2.32
CCDC88BA6NC98 AC012435.1-202ENST00000568772 240 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
CCDC88BA6NC98 RNU2-63P-201ENST00000410792 194 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 RPL7P29-201ENST00000437151 728 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 DDX3P2-201ENST00000446138 111 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
CCDC88BA6NC98 PSMC1P5-201ENST00000512850 177 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 AC026271.5-201ENST00000577873 130 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.54□□□□□ -2.32
CCDC88BA6NC98 U6.48-201ENST00000618523 106 ntBASIC0.54□□□□□ -2.32
CCDC88BA6NC98 AL391516.1-201ENST00000554380 2449 ntBASIC0.53□□□□□ -2.32
CCDC88BA6NC98 Y_RNA.390-201ENST00000383932 102 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 MIR32-201ENST00000384965 70 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 MIR518D-201ENST00000385014 87 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 MIR329-2-201ENST00000385029 84 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 AL117342.1-201ENST00000404861 406 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 AC069282.1-201ENST00000411911 526 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 RSU1P2-202ENST00000437884 485 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.53□□□□□ -2.33
CCDC88BA6NC98 APOOP3-201ENST00000536787 586 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 AC233702.2-202ENST00000562547 291 ntBASIC0.53□□□□□ -2.33
CCDC88BA6NC98 MTND4P16-201ENST00000466108 1367 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 MTCO1P23-201ENST00000415223 1526 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU1-23P-201ENST00000363361 144 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU6-1251P-201ENST00000364502 107 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 MTCO1P56-201ENST00000401674 224 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 MIR1912-201ENST00000410389 80 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU2-64P-201ENST00000411315 191 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 MRPS36P1-201ENST00000421291 307 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC007742.1-201ENST00000425789 329 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC244023.1-201ENST00000426884 112 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 ELOCP26-201ENST00000436067 329 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC104689.1-201ENST00000473356 768 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 SNORA48.9-201ENST00000516419 162 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU6-1282P-201ENST00000516735 96 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 EIF4A1P12-201ENST00000551910 141 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC242498.1-201ENST00000604134 111 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AP000254.1-201ENST00000609934 520 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC087588.2-201ENST00000617667 426 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AC243994.1-201ENST00000618627 109 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 uc_338.17-201ENST00000619633 179 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 AL627230.5-201ENST00000619807 58 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 OR5H6-203ENST00000642105 978 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.52□□□□□ -2.33
CCDC88BA6NC98 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
CCDC88BA6NC98 RNU6-968P-201ENST00000384076 107 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 Y_RNA.518-201ENST00000384552 113 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 MRPL35P1-201ENST00000404272 572 ntBASIC0.51□□□□□ -2.33
CCDC88BA6NC98 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC88BA6NC98 AC004854.1-201ENST00000440356 349 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms