Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.64□□□□□ -1.83
PCDHA3Q9Y5H8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AP001148.1-201ENST00000624124 2359 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC006026.1-201ENST00000444025 1803 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU1-75P-201ENST00000347264 129 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-562P-201ENST00000362731 107 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 SNORD14B-201ENST00000364533 90 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-166P-201ENST00000384371 107 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-1035P-201ENST00000384477 107 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6ATAC-201ENST00000408749 126 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RN7SKP158-201ENST00000410453 326 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 CYCSP19-201ENST00000411715 316 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC107399.1-201ENST00000451226 265 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC006539.3-201ENST00000454258 129 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RPL23AP14-201ENST00000468281 468 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 MTND5P5-201ENST00000503764 376 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RPL39P5-202ENST00000512505 151 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-1332P-201ENST00000516666 104 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-273P-201ENST00000516937 96 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 RNU1-45P-201ENST00000517191 141 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AP005639.2-201ENST00000527592 928 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 MIR3186-201ENST00000577404 85 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 MIR4790-201ENST00000577799 79 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC138761.3-201ENST00000579993 334 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AL355598.1-201ENST00000604169 202 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC245389.1-201ENST00000605141 529 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 U4.6-201ENST00000621618 127 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC092628.2-201ENST00000622492 339 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AC032011.1-201ENST00000611703 1549 ntBASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PCDHA3Q9Y5H8 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 SNORA62.3-201ENST00000365110 153 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-214P-201ENST00000384130 107 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RPS4XP3-201ENST00000398541 413 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 MIR548F5-201ENST00000408421 86 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RPS3AP52-201ENST00000435639 297 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 SNRPEP4-201ENST00000435815 279 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 MTATP6P7-201ENST00000453315 681 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RPL12P25-201ENST00000455592 494 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AL583843.1-201ENST00000456070 346 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC092798.1-201ENST00000458542 409 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 U3.44-201ENST00000458938 192 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.635-201ENST00000459041 101 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RPL23AP67-201ENST00000465341 474 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC026801.1-201ENST00000497178 464 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 RNU6-572P-201ENST00000516724 80 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 HIGD1AP1-201ENST00000550979 275 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC006130.2-201ENST00000586202 326 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 AC135507.2-201ENST00000612443 309 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 MIR6076-201ENST00000617521 113 ntBASIC3.62□□□□□ -1.83
PCDHA3Q9Y5H8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.67-201ENST00000362870 100 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 Y_RNA.460-201ENST00000384255 102 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 SNORA48.7-201ENST00000391302 135 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 MIR888-201ENST00000401186 77 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AC093578.1-201ENST00000415219 368 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AL096701.2-201ENST00000416920 238 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AL035423.1-201ENST00000420331 213 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 RPL23AP82-202ENST00000427528 469 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 HMGB1P9-201ENST00000429856 646 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AC007389.2-201ENST00000434630 306 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 FABP5P14-201ENST00000437273 393 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AL078601.1-201ENST00000444542 271 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AL590664.1-201ENST00000448065 339 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 SNORD105B-201ENST00000458770 79 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 CENPBD1P1-201ENST00000464061 469 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 RN7SL442P-201ENST00000473804 320 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 RPS4XP22-201ENST00000480755 780 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 RPL21P129-201ENST00000491732 478 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AC107934.2-201ENST00000518653 310 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AC026371.1-201ENST00000551867 419 ntBASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.61□□□□□ -1.83
PCDHA3Q9Y5H8 NUTF2P8-201ENST00000604593 363 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms