Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AF117829.1-206ENST00000621883 3802 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC002546.1-201ENST00000588041 2504 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 MIR148B-201ENST00000362252 99 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 MIR578-201ENST00000384828 96 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 MIR134-201ENST00000385258 73 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 RPS29P4-201ENST00000414733 161 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 RPL32P35-201ENST00000415214 394 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL353621.1-201ENST00000418219 243 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL360271.2-201ENST00000447710 161 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 RN7SL330P-201ENST00000469709 307 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.675-201ENST00000516389 149 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC007458.1-201ENST00000542812 373 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AC136601.2-201ENST00000604356 474 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL591516.1-201ENST00000611326 274 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 AL157817.1-201ENST00000614264 790 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 uc_338.15-201ENST00000615470 191 ntBASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMCH1Q9UPQ0 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-694P-201ENST00000364071 147 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.509-201ENST00000384506 99 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 MIR450B-201ENST00000401182 78 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-1025P-201ENST00000410629 104 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-607P-201ENST00000411283 108 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC091286.1-201ENST00000431233 461 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-256P-201ENST00000516747 97 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC087854.1-201ENST00000519706 414 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 LRRC37A5P-203ENST00000580181 585 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 AC073539.2-201ENST00000597113 165 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 CUL1P1-201ENST00000509510 2425 ntBASIC3.81□□□□□ -1.8
LIMCH1Q9UPQ0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 MIR412-201ENST00000362142 91 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 U3.6-201ENST00000363622 211 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-128P-201ENST00000383976 107 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-1179P-201ENST00000384667 107 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 RNU2-68P-201ENST00000410878 191 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 YPEL5P1-201ENST00000419731 367 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AL512844.2-201ENST00000433990 593 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 SNRPEP9-201ENST00000436794 238 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 SETP5-201ENST00000437270 562 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AC092001.1-201ENST00000453012 261 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 CECR9-201ENST00000453421 199 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 HIGD1AP1-201ENST00000550979 275 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 MIR5692C1-201ENST00000585309 91 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AL121757.2-201ENST00000611223 313 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 DUSP12P1-201ENST00000612874 516 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AL031601.2-202ENST00000622650 282 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 AC099506.2-201ENST00000623074 221 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 Z83843.1-201ENST00000604070 3685 ntBASIC3.8□□□□□ -1.8
LIMCH1Q9UPQ0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms