Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SNORA48.11-201ENST00000517015 89 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AC121758.2-201ENST00000553271 193 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 MIR4319-201ENST00000577285 85 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL355297.2-201ENST00000604792 129 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 SNORD14A-201ENST00000606526 91 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AC063944.3-201ENST00000609969 533 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL161423.1-201ENST00000613700 262 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNU6-1010P-201ENST00000362757 107 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNU4-1-201ENST00000363925 141 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNU1-112P-201ENST00000364401 164 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNA5SP270-201ENST00000411361 118 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 TOMM20P4-201ENST00000427861 435 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC112220.1-201ENST00000434628 355 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNU7-125P-201ENST00000458760 62 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 MED28P2-201ENST00000475771 317 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 FABP5P5-201ENST00000515537 406 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNA5SP76-201ENST00000516277 87 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 CYCSP26-201ENST00000534107 320 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC079600.2-201ENST00000550076 130 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC138649.3-201ENST00000622154 254 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 AC079248.2-201ENST00000623779 326 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 MTND4P4-201ENST00000439033 1366 ntBASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHMP4AQ9BY43 RNU5E-1-201ENST00000362477 120 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 MTCYBP36-201ENST00000404146 440 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC005005.2-201ENST00000420779 380 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 MTND5P25-201ENST00000430499 799 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC009238.1-201ENST00000442165 424 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 HIGD1AP2-201ENST00000446367 280 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC009237.6-201ENST00000446969 424 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AP000936.2-201ENST00000447151 681 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 ZNF114P1-201ENST00000453500 292 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC112771.1-201ENST00000463581 102 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 HMGB1P30-201ENST00000492455 606 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC119751.5-201ENST00000514077 770 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC106038.2-201ENST00000520706 568 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 RPL21P5-201ENST00000554662 472 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC008015.1-201ENST00000555505 465 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC006023.1-201ENST00000603944 259 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 AC027807.2-201ENST00000616099 408 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 CR381653.2-201ENST00000624041 768 ntBASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHMP4AQ9BY43 MIR196B-201ENST00000384852 84 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 MIR181A2-201ENST00000384863 110 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 MIR561-201ENST00000385216 97 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 SNORA40.19-201ENST00000390846 128 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 RPS3AP36-201ENST00000398190 775 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC092809.3-201ENST00000415453 231 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AL589872.1-201ENST00000426602 288 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 IFNA11P-201ENST00000446352 526 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AL583843.1-201ENST00000456070 346 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 RPL7P43-201ENST00000478876 753 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 FAM92A1P2-202ENST00000504766 877 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 HMGB3P3-201ENST00000510526 400 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC108078.2-201ENST00000510750 236 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 LRRC34P1-201ENST00000542742 915 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 CR383656.8-201ENST00000549046 145 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC136619.2-201ENST00000563361 631 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC092325.1-201ENST00000566449 554 ntBASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.43□□□□□ -1.86
CHMP4AQ9BY43 OR4G2P-201ENST00000328113 903 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 RNU6-843P-201ENST00000384454 104 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms