Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 AC015813.4-201ENST00000610469 179 ntBASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 AC087588.2-201ENST00000617667 426 ntBASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 AC027309.3-201ENST00000623419 351 ntBASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 Z99571.1-201ENST00000636677 394 ntBASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 MFSD8-236ENST00000641509 4050 ntBASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
LRFN3Q9BTN0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 RNU1-108P-201ENST00000362556 161 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 RNU6-395P-201ENST00000365662 106 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 RNU6-393P-201ENST00000384475 107 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR195-201ENST00000385194 87 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 RNU6-1106P-201ENST00000390845 107 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AL445529.1-201ENST00000398713 389 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC092573.2-201ENST00000434546 243 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 HMGN2P7-201ENST00000456186 273 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AL117187.1-201ENST00000555482 181 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR5680-201ENST00000577577 84 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR4769-201ENST00000584126 77 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR3149-201ENST00000584629 83 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR548AC-201ENST00000585049 88 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 U2.17-201ENST00000611454 95 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC002076.2-201ENST00000617362 122 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 MIR6076-201ENST00000617521 113 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AC007792.1-201ENST00000623023 402 ntBASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.81□□□□□ -1.8
LRFN3Q9BTN0 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 RNA5SP295-201ENST00000362655 121 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 Y_RNA.112-201ENST00000363250 102 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 Y_RNA.399-201ENST00000383955 105 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 RNU6-1127P-201ENST00000384580 107 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AC063979.1-201ENST00000415539 377 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 UBE2D3P2-201ENST00000424409 445 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 RPS24P13-201ENST00000442520 397 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 RPL21P41-201ENST00000459863 264 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AC004801.2-202ENST00000463559 283 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 Y_RNA.654-201ENST00000497848 106 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 CCDC34P1-201ENST00000507441 517 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 RN7SKP24-201ENST00000515888 284 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AC110588.1-201ENST00000559699 137 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AL670379.10-201ENST00000604330 253 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AL670379.9-201ENST00000605428 253 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AC005086.4-201ENST00000623065 213 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 AF127577.6-201ENST00000623352 2191 ntBASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LRFN3Q9BTN0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RNU6-1188P-201ENST00000363795 107 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RNU6-1318P-201ENST00000365389 103 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 Y_RNA.452-201ENST00000384202 108 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RNU1-44P-201ENST00000384453 163 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 MIR3074-201ENST00000384885 81 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 MT-TR-201ENST00000387439 65 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 SNORD70.1-201ENST00000391007 85 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RPS4XP3-201ENST00000398541 413 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RNU2-68P-201ENST00000410878 191 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 RNA5SP104-201ENST00000410989 118 ntBASIC3.79□□□□□ -1.8
LRFN3Q9BTN0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms