Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTND4P35-201ENST00000604257 1375 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NKX3-1Q99801 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NKX3-1Q99801 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 Y_RNA.9-201ENST00000362354 101 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 SNORD3E-201ENST00000362899 217 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 RNY4P14-201ENST00000363656 96 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 Y_RNA.256-201ENST00000364594 104 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 U8.9-201ENST00000365667 134 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 RNU6-198P-201ENST00000384258 104 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AL031121.1-201ENST00000406553 254 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 BTF3P7-201ENST00000407097 488 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 RNU6-648P-201ENST00000410190 107 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 RPL21P90-201ENST00000415692 466 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 USP9YP27-201ENST00000418455 438 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 EIF1P1-201ENST00000421436 341 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 AL360271.2-201ENST00000447710 161 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 RNU7-180P-201ENST00000459240 63 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC104472.2-201ENST00000469035 601 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 RN7SL633P-201ENST00000488974 297 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 EIF4EP3-201ENST00000498782 656 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
NKX3-1Q99801 RN7SKP43-201ENST00000516173 320 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 RNU1-103P-201ENST00000516502 125 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 SUB1P1-201ENST00000524415 382 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 MTND1P35-201ENST00000526739 508 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 AL157871.3-201ENST00000557231 293 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC007014.2-201ENST00000615581 479 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 YWHAEP7-203ENST00000622054 312 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.61□□□□□ -1.99
NKX3-1Q99801 MIR3688-2-201ENST00000636963 87 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 ASNSP3-201ENST00000451989 1306 ntBASIC2.61□□□□□ -1.99
NKX3-1Q99801 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC233263.6-201ENST00000631132 1963 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 RNU6-715P-201ENST00000365204 103 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 Y_RNA.402-201ENST00000383972 102 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 MIR301A-201ENST00000385261 86 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 SNORA48.2-201ENST00000390926 124 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 RNU2-29P-201ENST00000410423 189 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL669831.1-202ENST00000428504 417 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 MYL8P-204ENST00000431574 518 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 GTF2IP13-201ENST00000438487 386 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL671855.1-201ENST00000446875 1203 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC112206.3-201ENST00000514578 389 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 RNU6-1178P-201ENST00000516674 107 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 RNU6-703P-201ENST00000516946 107 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
NKX3-1Q99801 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL512310.1-201ENST00000548639 172 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC012493.2-201ENST00000595083 291 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC073539.2-201ENST00000597113 165 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL138889.2-201ENST00000603883 242 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL160394.1-201ENST00000624765 724 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 AL359693.1-201ENST00000614959 2407 ntBASIC2.6□□□□□ -1.99
NKX3-1Q99801 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
NKX3-1Q99801 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 Y_RNA.33-201ENST00000362591 102 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNA5SP374-201ENST00000362939 125 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNU6-799P-201ENST00000363567 107 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNU4-20P-201ENST00000365601 151 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 Z98749.2-208ENST00000381646 500 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNU1-73P-201ENST00000383971 164 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 RNU6-1127P-201ENST00000384580 107 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 MIR181A2-201ENST00000384863 110 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 SNORA26.7-201ENST00000391288 122 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 CIR1P3-201ENST00000405137 479 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 USP9YP28-201ENST00000435142 589 ntBASIC2.59□□□□□ -1.99
NKX3-1Q99801 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX3-1Q99801 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms