Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS1Q99742 ADAM3A-203ENST00000461344 2157 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU4-35P-201ENST00000362588 141 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AP002088.1-201ENST00000382740 395 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 SNORD17-201ENST00000390930 237 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 SNORA48.8-201ENST00000391324 134 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU6-607P-201ENST00000411283 108 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 NDUFS5P4-201ENST00000412983 318 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RPL7P10-201ENST00000417407 739 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AL353678.1-201ENST00000422735 741 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AL365400.1-201ENST00000431854 640 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AC005019.1-201ENST00000436455 431 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC125238.1-201ENST00000448842 249 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 MTATP6P7-201ENST00000453315 681 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU1-86P-201ENST00000516108 154 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU1-107P-201ENST00000516617 154 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU7-30P-201ENST00000516835 62 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU6-1183P-201ENST00000517054 60 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AL163153.1-201ENST00000554223 283 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC007938.3-201ENST00000604965 623 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 RNU6-85P-201ENST00000605989 107 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AL355073.2-201ENST00000612106 557 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AC005858.4-201ENST00000623191 700 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS1Q99742 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
NPAS1Q99742 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.17□□□□□ -1.9
NPAS1Q99742 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
NPAS1Q99742 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
NPAS1Q99742 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC121333.1-201ENST00000567488 2709 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 RNU6-166P-201ENST00000384371 107 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 RNU6-831P-201ENST00000384548 107 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 MIR200C-201ENST00000384980 68 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 RNU1-101P-201ENST00000391171 127 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL122016.1-201ENST00000403365 367 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL592148.1-201ENST00000413568 445 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 HMGB1P9-201ENST00000429856 646 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.16□□□□□ -1.9
NPAS1Q99742 BX679664.1-201ENST00000434429 253 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL671855.1-201ENST00000446875 1203 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 SNORD105B-201ENST00000458770 79 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC008155.2-201ENST00000464337 397 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 RPL21P129-201ENST00000491732 478 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC091951.2-201ENST00000500762 203 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC087854.1-201ENST00000519706 414 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AC025423.5-201ENST00000550230 219 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 TGIF1P1-201ENST00000558095 802 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 MTCO3P23-201ENST00000561363 289 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC026464.5-201ENST00000562497 722 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.16□□□□□ -1.9
NPAS1Q99742 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 OR1M4P-201ENST00000589199 287 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 AC004852.3-201ENST00000614131 326 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC022306.2-201ENST00000617563 647 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 AC022149.2-201ENST00000621061 203 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 PWAR6-201ENST00000552334 4618 ntBASIC3.16□□□□□ -1.9
NPAS1Q99742 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
NPAS1Q99742 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NPAS1Q99742 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
NPAS1Q99742 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
NPAS1Q99742 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
NPAS1Q99742 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
NPAS1Q99742 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.15□□□□□ -1.9
NPAS1Q99742 RNU6-778P-201ENST00000363269 103 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 RNU6-254P-201ENST00000363377 107 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 SNORD14B-201ENST00000364533 90 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 RNU6-1148P-201ENST00000410992 104 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 RNU6-55P-201ENST00000411092 107 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 RNU6-954P-201ENST00000411355 107 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 MTND3P8-201ENST00000412909 339 ntBASIC3.15□□□□□ -1.91
NPAS1Q99742 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms