Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CBX3P1-201ENST00000325243 554 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP88Q99567 RNU6-82P-201ENST00000363970 107 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 RNU6-1303P-201ENST00000364841 107 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 Y_RNA.604-201ENST00000410574 102 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.81□□□□□ -1.8
NUP88Q99567 AC098614.3-201ENST00000438957 440 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP88Q99567 RPL26P9-201ENST00000457466 433 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.81□□□□□ -1.8
NUP88Q99567 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.81□□□□□ -1.8
NUP88Q99567 RPL21P93-201ENST00000480465 489 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 AC006445.1-201ENST00000491925 405 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 RNU1-103P-201ENST00000516502 125 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 SNORA20.3-201ENST00000516880 132 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 MIR2276-201ENST00000516886 89 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 RNU6-1314P-201ENST00000517139 104 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.81□□□□□ -1.8
NUP88Q99567 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 AMZ2P1-203ENST00000565833 850 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 AC063943.3-201ENST00000615562 356 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 MIR7153-201ENST00000637758 57 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
NUP88Q99567 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NUP88Q99567 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP88Q99567 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 RNU1-75P-201ENST00000347264 129 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 MIR412-201ENST00000362142 91 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 SNORD3E-201ENST00000362899 217 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 Y_RNA.100-201ENST00000363141 102 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP88Q99567 AL356057.2-201ENST00000403318 432 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC022028.1-201ENST00000412054 408 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP88Q99567 AL356968.1-201ENST00000416622 474 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AL353729.1-201ENST00000425044 720 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 RPL35AP12-201ENST00000425362 338 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP88Q99567 PMCHL2-203ENST00000457791 237 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP88Q99567 AC008628.2-201ENST00000502605 298 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC110794.1-201ENST00000505816 425 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 SNORA19.2-201ENST00000516013 114 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC009902.1-201ENST00000519351 183 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP88Q99567 AC243972.3-201ENST00000539655 198 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP88Q99567 TRAV37-201ENST00000553906 342 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP88Q99567 H3F3AP1-201ENST00000559984 334 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.8□□□□□ -1.8
NUP88Q99567 MIR4782-201ENST00000577987 79 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP88Q99567 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.8□□□□□ -1.8
NUP88Q99567 MTND4LP5-201ENST00000605152 292 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AC073657.2-201ENST00000605661 303 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP88Q99567 AL136221.1-201ENST00000621449 509 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 AP003122.6-201ENST00000623831 495 ntBASIC3.8□□□□□ -1.8
NUP88Q99567 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.8□□□□□ -1.8
NUP88Q99567 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP88Q99567 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP88Q99567 RNU6-522P-201ENST00000364497 107 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 Y_RNA.399-201ENST00000383955 105 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP88Q99567 MIR888-201ENST00000401186 77 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AL353678.1-201ENST00000422735 741 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP88Q99567 AC098614.2-201ENST00000426040 255 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 HMGN2P20-201ENST00000437531 273 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AL078601.1-201ENST00000444542 271 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 MTND5P20-201ENST00000448677 143 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 CENPBD1P1-201ENST00000464061 469 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 RPL23AP67-201ENST00000465341 474 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 RPL7P47-201ENST00000497299 556 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 MTCO2P30-201ENST00000503662 364 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AC107934.2-201ENST00000518653 310 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP88Q99567 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 AL031601.2-202ENST00000622650 282 ntBASIC3.79□□□□□ -1.8
NUP88Q99567 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.79□□□□□ -1.8
NUP88Q99567 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NUP88Q99567 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.79□□□□□ -1.8
NUP88Q99567 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
NUP88Q99567 AC010733.2-201ENST00000589496 5702 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms