Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
USP43Q70EL4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP43Q70EL4 AL138713.1-201ENST00000624026 2130 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP43Q70EL4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP43Q70EL4 AC093010.3-201ENST00000570269 15214 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP43Q70EL4 API5P2-201ENST00000397055 1498 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 MFSD8-233ENST00000641482 4860 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AL359893.1-201ENST00000447628 1580 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 Y_RNA.100-201ENST00000363141 102 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 Y_RNA.135-201ENST00000363439 95 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RNU6-1188P-201ENST00000363795 107 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RNU5A-8P-201ENST00000364102 114 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RNY3P13-201ENST00000365542 102 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC117470.1-201ENST00000381974 330 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 MIR19A-201ENST00000384878 82 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 MIR558-201ENST00000384920 94 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 MIR454-201ENST00000390180 115 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 SNORA11.2-201ENST00000408318 127 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RN7SKP158-201ENST00000410453 326 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP43Q70EL4 MCFD2P1-201ENST00000417812 300 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC244098.2-201ENST00000422068 99 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP43Q70EL4 HMGN2P20-201ENST00000437531 273 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 HMGB3P11-201ENST00000440127 604 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AL035666.1-201ENST00000446195 348 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RPS27AP1-201ENST00000475545 471 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC098591.2-201ENST00000510152 315 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC074250.1-201ENST00000511117 192 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC007536.1-201ENST00000533382 349 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC024224.1-201ENST00000538284 609 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USP43Q70EL4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.1□□□□□ -1.91
USP43Q70EL4 MIR3942-201ENST00000585264 109 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AP001029.3-201ENST00000588063 596 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AL121992.2-201ENST00000606262 256 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AC245517.5-201ENST00000611529 162 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.1□□□□□ -1.91
USP43Q70EL4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
USP43Q70EL4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AP003355.3-201ENST00000623465 114 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.1□□□□□ -1.91
USP43Q70EL4 AC093831.2-201ENST00000624393 3427 ntBASIC3.1□□□□□ -1.91
USP43Q70EL4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.1□□□□□ -1.91
USP43Q70EL4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
USP43Q70EL4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP43Q70EL4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 TAB3P1-202ENST00000452645 1634 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 RNU6-1115P-201ENST00000362490 106 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNU6-511P-201ENST00000363496 107 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 Y_RNA.153-201ENST00000363615 91 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNU6-1062P-201ENST00000383908 107 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 SNORD3H-201ENST00000384486 214 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 Y_RNA.527-201ENST00000384573 102 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 Y_RNA.574-201ENST00000384766 95 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 MIR218-2-201ENST00000385006 110 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
USP43Q70EL4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.09□□□□□ -1.91
USP43Q70EL4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 MIR548F5-201ENST00000408421 86 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNU6-370P-201ENST00000411008 104 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 RNA5SP344-201ENST00000411081 104 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.09□□□□□ -1.91
USP43Q70EL4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 OR4K11P-201ENST00000431829 904 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 MTATP6P16-201ENST00000434543 526 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 UBE2V1P13-201ENST00000436983 439 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.09□□□□□ -1.91
USP43Q70EL4 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP43Q70EL4 AC008264.1-201ENST00000447612 367 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AL353691.1-201ENST00000451332 387 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.09□□□□□ -1.91
USP43Q70EL4 RPL21P8-201ENST00000465083 535 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AL049714.1-201ENST00000466686 347 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AC006512.1-201ENST00000468816 291 ntBASIC3.09□□□□□ -1.91
USP43Q70EL4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.09□□□□□ -1.91
USP43Q70EL4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms