Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 HMGB1P9-201ENST00000429856 646 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 MYL8P-204ENST00000431574 518 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 FGF7P6-202ENST00000451282 293 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AC092798.1-201ENST00000458542 409 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 CENPBD1P1-201ENST00000464061 469 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AC109635.3-201ENST00000529536 185 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AL391261.3-201ENST00000557194 520 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 MIR4319-201ENST00000577285 85 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 AL670379.4-201ENST00000605279 254 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 ELF2P3-201ENST00000445099 1506 ntBASIC3.08□□□□□ -1.92
COL28A1Q2UY09 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.08□□□□□ -1.92
COL28A1Q2UY09 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 HSPA8P4-201ENST00000511877 1920 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 Y_RNA.33-201ENST00000362591 102 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU6-371P-201ENST00000364283 108 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU6-483P-201ENST00000384088 108 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU6-198P-201ENST00000384258 104 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 MIR548F1-201ENST00000408667 84 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU6-908P-201ENST00000410160 94 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNA5SP111-201ENST00000411386 101 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 NDUFS5P4-201ENST00000412983 318 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL356968.1-201ENST00000416622 474 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 HMGN2P30-201ENST00000423237 256 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 NEK4P1-201ENST00000433383 879 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 SEPT14P3-201ENST00000439401 183 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL732372.2-207ENST00000445840 183 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 SEPT14P2-201ENST00000453405 183 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU7-23P-201ENST00000459465 62 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RPL23AP11-201ENST00000475260 469 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 MTAPP1-201ENST00000489154 819 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 SEPT14P4-201ENST00000513445 186 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNA5SP385-201ENST00000515947 110 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 RNU6-1281P-201ENST00000516223 105 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC009902.1-201ENST00000519351 183 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 FO082796.1-201ENST00000523795 183 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 HIF1AP1-201ENST00000553642 175 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC068135.2-201ENST00000569293 1028 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 MIR548AC-201ENST00000585049 88 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 ELOCP29-201ENST00000588193 334 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC007938.3-201ENST00000604965 623 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC024940.5-201ENST00000622889 474 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 FER-210ENST00000628534 558 ntTSL 5 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL28A1Q2UY09 AC017071.1-201ENST00000564407 2204 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 MAPK10-362ENST00000641864 4484 ntBASIC3.07□□□□□ -1.92
COL28A1Q2UY09 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 Y_RNA.381-201ENST00000365666 102 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 RNU1-73P-201ENST00000383971 164 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 RNA5SP184-201ENST00000411071 108 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 EEF1A1P41-201ENST00000414667 207 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 USP9YP27-201ENST00000418455 438 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 MTCYBP8-201ENST00000422855 651 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC098614.2-201ENST00000426040 255 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AL354685.2-201ENST00000448218 1447 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 snoU13.28-201ENST00000459235 104 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 RPL21P41-201ENST00000459863 264 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC104136.1-201ENST00000512969 394 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 LRRC34P2-201ENST00000514850 553 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AL137161.1-201ENST00000532231 390 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 MIR4424-201ENST00000585257 86 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC107304.1-201ENST00000604229 296 ntBASIC3.06□□□□□ -1.92
COL28A1Q2UY09 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL28A1Q2UY09 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL28A1Q2UY09 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms