Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.3□□□□□ -2.36
COL7A1Q02388 AL358794.1-201ENST00000445689 381 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 ANKRD26P4-201ENST00000455755 950 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.3□□□□□ -2.36
COL7A1Q02388 SNORD14A-201ENST00000606526 91 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC0.3□□□□□ -2.36
COL7A1Q02388 AL138726.1-201ENST00000614873 333 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC106800.4-201ENST00000614905 153 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 RMST_5.1-201ENST00000618704 126 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 U3.13-201ENST00000364804 214 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AC010099.3-201ENST00000423896 409 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC006548.1-201ENST00000427470 102 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 RPL7L1P10-201ENST00000427790 463 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 Z82210.1-201ENST00000440037 231 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 TPMTP4-201ENST00000450749 678 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 RNU7-23P-201ENST00000459465 62 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC107626.1-201ENST00000471084 183 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 SNORA62.5-201ENST00000516634 120 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC118273.2-201ENST00000532092 465 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 LSM6P2-201ENST00000552208 177 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC090666.1-201ENST00000578241 445 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AL161629.2-201ENST00000615347 275 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 MIR6864-201ENST00000617935 70 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AL356585.4-201ENST00000623078 1229 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AP003400.5-201ENST00000624827 617 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 CR381572.1-201ENST00000625098 102 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
COL7A1Q02388 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
COL7A1Q02388 RNU6-1328P-201ENST00000410938 106 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 BEND7P1-201ENST00000422058 457 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 BX248409.1-201ENST00000455497 255 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 SYPL1P1-201ENST00000473622 768 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AGGF1P5-201ENST00000567900 919 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC015849.6-201ENST00000605454 474 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AL355472.4-201ENST00000610233 626 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.29□□□□□ -2.36
COL7A1Q02388 AC008163.1-202ENST00000636004 2889 ntBASIC0.29□□□□□ -2.36
COL7A1Q02388 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
COL7A1Q02388 Y_RNA.375-201ENST00000365625 101 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.28□□□□□ -2.36
COL7A1Q02388 Y_RNA.476-201ENST00000384347 108 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RNU6-244P-201ENST00000391028 104 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 VN1R36P-201ENST00000414936 291 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AL109913.1-201ENST00000421173 514 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RPL36P19-201ENST00000430744 301 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 PRPS1P1-201ENST00000445305 876 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.28□□□□□ -2.36
COL7A1Q02388 LARP1BP2-201ENST00000486594 519 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AC113398.2-201ENST00000507630 558 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC0.28□□□□□ -2.36
COL7A1Q02388 MRPS36P2-201ENST00000512569 299 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RNU4-57P-201ENST00000515980 135 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 DUXAP1-201ENST00000556632 463 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AL590410.1-201ENST00000617925 333 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 RNA5SP361-201ENST00000362686 118 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 SNORA50A-201ENST00000384225 134 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AL031577.2-201ENST00000404133 280 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RPL23AP95-201ENST00000426806 265 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC004062.1-201ENST00000509926 645 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AF213884.2-201ENST00000510417 903 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.28□□□□□ -2.36
COL7A1Q02388 MIR892C-201ENST00000516410 77 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 Y_RNA.684-201ENST00000516510 99 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 RNU6-1004P-201ENST00000516584 111 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.28□□□□□ -2.36
COL7A1Q02388 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.28□□□□□ -2.36
COL7A1Q02388 MIR5190-201ENST00000581537 80 ntBASIC0.28□□□□□ -2.36
COL7A1Q02388 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.28□□□□□ -2.36
COL7A1Q02388 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU1-58P-201ENST00000362413 163 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-697P-201ENST00000363348 107 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU1-96P-201ENST00000364163 162 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-220P-201ENST00000390919 107 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 Y_RNA.583-201ENST00000391033 113 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms