Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 RNU6-217P-201ENST00000384164 104 ntBASIC3.53□□□□□ -1.84
COPAP53621 RNU6-434P-201ENST00000384376 107 ntBASIC3.53□□□□□ -1.84
COPAP53621 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COPAP53621 RNU6-1025P-201ENST00000410629 104 ntBASIC3.53□□□□□ -1.84
COPAP53621 RNU2-41P-201ENST00000410991 178 ntBASIC3.53□□□□□ -1.84
COPAP53621 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COPAP53621 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 AC008264.1-201ENST00000447612 367 ntBASIC3.53□□□□□ -1.84
COPAP53621 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.53□□□□□ -1.84
COPAP53621 RPL12P25-201ENST00000455592 494 ntBASIC3.53□□□□□ -1.84
COPAP53621 RN7SL807P-201ENST00000470923 297 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC093663.1-201ENST00000497190 394 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC009901.1-201ENST00000506703 541 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.53□□□□□ -1.84
COPAP53621 RNU6-928P-201ENST00000516876 104 ntBASIC3.53□□□□□ -1.84
COPAP53621 IGKV2-26-201ENST00000518305 343 ntBASIC3.53□□□□□ -1.84
COPAP53621 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.53□□□□□ -1.84
COPAP53621 AC107953.1-201ENST00000522216 297 ntBASIC3.53□□□□□ -1.84
COPAP53621 AP006245.1-201ENST00000522549 120 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC087241.2-201ENST00000535801 324 ntBASIC3.53□□□□□ -1.84
COPAP53621 AL118558.2-201ENST00000556294 238 ntBASIC3.53□□□□□ -1.84
COPAP53621 FGF7P1-201ENST00000582820 288 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.53□□□□□ -1.84
COPAP53621 AC092747.3-201ENST00000603769 301 ntBASIC3.53□□□□□ -1.84
COPAP53621 AC099506.2-201ENST00000623074 221 ntBASIC3.53□□□□□ -1.84
COPAP53621 AP003400.5-201ENST00000624827 617 ntBASIC3.53□□□□□ -1.84
COPAP53621 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COPAP53621 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COPAP53621 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COPAP53621 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COPAP53621 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COPAP53621 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.53□□□□□ -1.84
COPAP53621 AC068647.1-201ENST00000489539 2265 ntBASIC3.53□□□□□ -1.85
COPAP53621 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
COPAP53621 AC022336.2-201ENST00000568966 2538 ntBASIC3.52□□□□□ -1.85
COPAP53621 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 AL356274.2-201ENST00000624379 3752 ntBASIC3.52□□□□□ -1.85
COPAP53621 Y_RNA.142-201ENST00000363491 102 ntBASIC3.52□□□□□ -1.85
COPAP53621 RNU6-522P-201ENST00000364497 107 ntBASIC3.52□□□□□ -1.85
COPAP53621 CD24P4-201ENST00000382840 243 ntBASIC3.52□□□□□ -1.85
COPAP53621 RNU6-45P-201ENST00000384471 107 ntBASIC3.52□□□□□ -1.85
COPAP53621 MIR578-201ENST00000384828 96 ntBASIC3.52□□□□□ -1.85
COPAP53621 RPS4XP7-201ENST00000406274 780 ntBASIC3.52□□□□□ -1.85
COPAP53621 U3.39-201ENST00000408569 239 ntBASIC3.52□□□□□ -1.85
COPAP53621 POLHP1-201ENST00000411806 470 ntBASIC3.52□□□□□ -1.85
COPAP53621 ATG3P1-201ENST00000419507 911 ntBASIC3.52□□□□□ -1.85
COPAP53621 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.52□□□□□ -1.85
COPAP53621 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 MTCO3P46-201ENST00000425787 232 ntBASIC3.52□□□□□ -1.85
COPAP53621 AL365400.1-201ENST00000431854 640 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC115115.1-201ENST00000449927 248 ntBASIC3.52□□□□□ -1.85
COPAP53621 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 AC139453.3-201ENST00000493276 369 ntBASIC3.52□□□□□ -1.85
COPAP53621 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 PHBP14-201ENST00000512887 367 ntBASIC3.52□□□□□ -1.85
COPAP53621 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.52□□□□□ -1.85
COPAP53621 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.52□□□□□ -1.85
COPAP53621 RNU6-189P-201ENST00000516120 101 ntBASIC3.52□□□□□ -1.85
COPAP53621 RN7SKP57-201ENST00000517248 293 ntBASIC3.52□□□□□ -1.85
COPAP53621 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COPAP53621 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.52□□□□□ -1.85
COPAP53621 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 AC005668.1-201ENST00000571142 476 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 MIR3609-201ENST00000582661 80 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC091135.1-201ENST00000585943 307 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC005261.5-201ENST00000596280 355 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.52□□□□□ -1.85
COPAP53621 AL160281.1-201ENST00000605307 311 ntBASIC3.52□□□□□ -1.85
COPAP53621 FTX_3.1-201ENST00000610451 147 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC022149.2-201ENST00000621061 203 ntBASIC3.52□□□□□ -1.85
COPAP53621 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.52□□□□□ -1.85
COPAP53621 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.52□□□□□ -1.85
COPAP53621 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COPAP53621 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.51□□□□□ -1.85
COPAP53621 AL513302.2-201ENST00000562313 1842 ntBASIC3.51□□□□□ -1.85
COPAP53621 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COPAP53621 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
COPAP53621 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
COPAP53621 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
COPAP53621 AC091564.4-201ENST00000533934 2194 ntBASIC3.51□□□□□ -1.85
COPAP53621 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COPAP53621 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COPAP53621 Y_RNA.166-201ENST00000363730 102 ntBASIC3.51□□□□□ -1.85
COPAP53621 RNU6-371P-201ENST00000364283 108 ntBASIC3.51□□□□□ -1.85
COPAP53621 RNU6-1035P-201ENST00000384477 107 ntBASIC3.51□□□□□ -1.85
COPAP53621 Y_RNA.530-201ENST00000384587 101 ntBASIC3.51□□□□□ -1.85
COPAP53621 RNU6-1179P-201ENST00000384667 107 ntBASIC3.51□□□□□ -1.85
COPAP53621 MT-TD-201ENST00000387419 68 ntBASIC3.51□□□□□ -1.85
COPAP53621 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COPAP53621 SNORA16.2-201ENST00000390991 127 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 158.5 ms