Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.78□□□□□ -2.28
CUX1P39880 GTF2IP12-201ENST00000456547 356 ntBASIC0.78□□□□□ -2.28
CUX1P39880 RPL26P9-201ENST00000457466 433 ntBASIC0.78□□□□□ -2.28
CUX1P39880 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.78□□□□□ -2.28
CUX1P39880 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.78□□□□□ -2.28
CUX1P39880 AC079791.1-201ENST00000605356 973 ntBASIC0.78□□□□□ -2.28
CUX1P39880 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.78□□□□□ -2.28
CUX1P39880 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
CUX1P39880 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CUX1P39880 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CUX1P39880 RNU4-67P-201ENST00000364569 141 ntBASIC0.77□□□□□ -2.29
CUX1P39880 Y_RNA.549-201ENST00000384657 102 ntBASIC0.77□□□□□ -2.29
CUX1P39880 MIR329-2-201ENST00000385029 84 ntBASIC0.77□□□□□ -2.29
CUX1P39880 RNU6-821P-201ENST00000390995 107 ntBASIC0.77□□□□□ -2.29
CUX1P39880 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.77□□□□□ -2.29
CUX1P39880 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.77□□□□□ -2.29
CUX1P39880 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.77□□□□□ -2.29
CUX1P39880 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.77□□□□□ -2.29
CUX1P39880 AC023512.1-201ENST00000444513 499 ntBASIC0.77□□□□□ -2.29
CUX1P39880 AL096803.2-201ENST00000450032 677 ntBASIC0.77□□□□□ -2.29
CUX1P39880 AF213884.2-201ENST00000510417 903 ntBASIC0.77□□□□□ -2.29
CUX1P39880 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.77□□□□□ -2.29
CUX1P39880 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.77□□□□□ -2.29
CUX1P39880 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.77□□□□□ -2.29
CUX1P39880 AC018638.7-201ENST00000605836 1114 ntBASIC0.77□□□□□ -2.29
CUX1P39880 AL590410.1-201ENST00000617925 333 ntBASIC0.77□□□□□ -2.29
CUX1P39880 MTND4P8-201ENST00000514997 1362 ntBASIC0.77□□□□□ -2.29
CUX1P39880 RNU6-1155P-201ENST00000363554 107 ntBASIC0.76□□□□□ -2.29
CUX1P39880 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.76□□□□□ -2.29
CUX1P39880 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.76□□□□□ -2.29
CUX1P39880 RNU6-798P-201ENST00000516912 103 ntBASIC0.76□□□□□ -2.29
CUX1P39880 AC012669.1-201ENST00000603209 283 ntBASIC0.76□□□□□ -2.29
CUX1P39880 AC025588.3-201ENST00000604182 274 ntBASIC0.76□□□□□ -2.29
CUX1P39880 RPL31P53-201ENST00000457065 348 ntBASIC0.75□□□□□ -2.29
CUX1P39880 AC099513.1-201ENST00000490423 301 ntBASIC0.75□□□□□ -2.29
CUX1P39880 AP003327.1-201ENST00000529684 127 ntBASIC0.75□□□□□ -2.29
CUX1P39880 AP000654.2-201ENST00000605633 586 ntBASIC0.75□□□□□ -2.29
CUX1P39880 AC008443.7-201ENST00000622195 246 ntBASIC0.75□□□□□ -2.29
CUX1P39880 MIR7157-201ENST00000635801 60 ntBASIC0.75□□□□□ -2.29
CUX1P39880 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.75□□□□□ -2.29
CUX1P39880 RNU6-1226P-201ENST00000384317 107 ntBASIC0.74□□□□□ -2.29
CUX1P39880 RNU6-1222P-201ENST00000384615 107 ntBASIC0.74□□□□□ -2.29
CUX1P39880 RNA5SP57-201ENST00000459463 123 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC104164.3-201ENST00000467363 1258 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC104057.1-201ENST00000515547 497 ntBASIC0.74□□□□□ -2.29
CUX1P39880 RNU6-1282P-201ENST00000516735 96 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC069294.1-201ENST00000608397 350 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC022202.1-201ENST00000613515 211 ntBASIC0.74□□□□□ -2.29
CUX1P39880 U4atac.1-201ENST00000618345 95 ntBASIC0.74□□□□□ -2.29
CUX1P39880 OR5H6-203ENST00000642105 978 ntBASIC0.74□□□□□ -2.29
CUX1P39880 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.74□□□□□ -2.29
CUX1P39880 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.74□□□□□ -2.29
CUX1P39880 Y_RNA.67-201ENST00000362870 100 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC023141.4-201ENST00000412031 328 ntBASIC0.74□□□□□ -2.29
CUX1P39880 DYNLT3P2-201ENST00000442517 295 ntBASIC0.74□□□□□ -2.29
CUX1P39880 MTND2P19-201ENST00000449129 1012 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AL590365.1-201ENST00000450788 243 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.74□□□□□ -2.29
CUX1P39880 AC104629.2-201ENST00000468627 598 ntBASIC0.74□□□□□ -2.29
CUX1P39880 HMGB1P35-201ENST00000503360 598 ntBASIC0.74□□□□□ -2.29
CUX1P39880 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.74□□□□□ -2.29
CUX1P39880 RNA5SP137-201ENST00000516833 135 ntBASIC0.74□□□□□ -2.29
CUX1P39880 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.74□□□□□ -2.29
CUX1P39880 AC025857.1-201ENST00000525252 377 ntBASIC0.74□□□□□ -2.29
CUX1P39880 AC022254.1-201ENST00000567857 235 ntBASIC0.74□□□□□ -2.29
CUX1P39880 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.73□□□□□ -2.29
CUX1P39880 RNU6-338P-201ENST00000383888 105 ntBASIC0.73□□□□□ -2.29
CUX1P39880 RNA5SP299-201ENST00000391203 116 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AC114737.2-201ENST00000421583 173 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.73□□□□□ -2.29
CUX1P39880 VN1R42P-201ENST00000424651 344 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.73□□□□□ -2.29
CUX1P39880 RNU6-322P-201ENST00000516010 103 ntBASIC0.73□□□□□ -2.29
CUX1P39880 SNORA48.9-201ENST00000516419 162 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.73□□□□□ -2.29
CUX1P39880 MIR5589-201ENST00000579442 60 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AP003973.1-201ENST00000604639 691 ntBASIC0.73□□□□□ -2.29
CUX1P39880 DUXAP10-204ENST00000612052 616 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AC090116.1-201ENST00000615679 446 ntBASIC0.73□□□□□ -2.29
CUX1P39880 AC006213.5-201ENST00000619673 288 ntBASIC0.73□□□□□ -2.29
CUX1P39880 MIR30A-201ENST00000385092 71 ntBASIC0.72□□□□□ -2.29
CUX1P39880 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.72□□□□□ -2.29
CUX1P39880 DDX3P2-201ENST00000446138 111 ntBASIC0.72□□□□□ -2.29
CUX1P39880 HMGB1P36-201ENST00000487709 576 ntBASIC0.72□□□□□ -2.29
CUX1P39880 EIF4A1P12-201ENST00000551910 141 ntBASIC0.72□□□□□ -2.29
CUX1P39880 NIFKP6-201ENST00000598115 845 ntBASIC0.72□□□□□ -2.29
CUX1P39880 AC022387.2-201ENST00000604050 448 ntBASIC0.72□□□□□ -2.29
CUX1P39880 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.72□□□□□ -2.29
CUX1P39880 MIR424-201ENST00000362227 98 ntBASIC0.71□□□□□ -2.3
CUX1P39880 RPL21P24-201ENST00000413752 448 ntBASIC0.71□□□□□ -2.3
CUX1P39880 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.71□□□□□ -2.3
CUX1P39880 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.71□□□□□ -2.3
CUX1P39880 UBE2V2P3-201ENST00000433562 437 ntBASIC0.71□□□□□ -2.3
CUX1P39880 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.71□□□□□ -2.3
CUX1P39880 AL049714.1-201ENST00000466686 347 ntBASIC0.71□□□□□ -2.3
CUX1P39880 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.71□□□□□ -2.3
CUX1P39880 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.71□□□□□ -2.3
CUX1P39880 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.71□□□□□ -2.3
CUX1P39880 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.71□□□□□ -2.3
CUX1P39880 LINC00557-201ENST00000563184 1279 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms