Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
HOXC9P31274 WASF1P1-201ENST00000447560 1131 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC022364.2-201ENST00000457963 554 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC9P31274 AC108078.2-201ENST00000510750 236 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 RNU6-927P-201ENST00000516199 100 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 RNA5SP471-201ENST00000516971 106 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC9P31274 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC9P31274 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC9P31274 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC9P31274 AL158827.2-201ENST00000602494 330 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC012507.3-201ENST00000603556 477 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC009570.1-201ENST00000609599 745 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC139792.3-201ENST00000623525 224 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC093648.1-201ENST00000623546 606 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXC9P31274 AL691447.3-201ENST00000635020 330 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC068137.3-201ENST00000639191 341 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC073869.6-201ENST00000640656 341 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC9P31274 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC9P31274 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC9P31274 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 UBE2L2-201ENST00000254302 429 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RNU6-179P-201ENST00000363350 107 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HOXC9P31274 RNU6-741P-201ENST00000383889 107 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RNU6-14P-201ENST00000384630 106 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RNU6-780P-201ENST00000391030 104 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXC9P31274 AL353193.1-201ENST00000421444 268 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC9P31274 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 PSPHP1-201ENST00000450062 261 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC9P31274 AC093899.1-201ENST00000457984 376 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RPS29P15-201ENST00000458329 171 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RPS20P22-201ENST00000473700 357 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RPL23AP11-201ENST00000475260 469 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 RNA5SP380-201ENST00000517190 98 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 RNA5SP291-201ENST00000517222 105 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 AP003072.2-201ENST00000527756 676 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 AC092954.2-201ENST00000609103 430 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 AC130324.3-201ENST00000614165 542 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC026585.1-201ENST00000619582 524 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AC068792.1-201ENST00000621354 417 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 AL359880.1-201ENST00000621879 266 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC9P31274 AL161431.1-201ENST00000618966 4205 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC9P31274 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC9P31274 AC007785.2-201ENST00000598627 1916 ntBASIC3.17□□□□□ -1.9
HOXC9P31274 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC9P31274 ZNF680P1-201ENST00000436625 1469 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC9P31274 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HOXC9P31274 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC9P31274 OR4G2P-201ENST00000328113 903 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RNU6-512P-201ENST00000364438 103 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RNU6-517P-201ENST00000384362 110 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RPS4XP3-201ENST00000398541 413 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AL079342.1-201ENST00000401460 267 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AL591416.1-201ENST00000404015 867 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AL139397.2-201ENST00000404529 772 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AL162578.1-201ENST00000406202 378 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RNU4-26P-201ENST00000410270 107 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC9P31274 AL512844.2-201ENST00000433990 593 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 MTND1P4-201ENST00000435196 415 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC9P31274 RNU6-953P-201ENST00000459154 107 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 MRPS17P3-201ENST00000465453 385 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RPL23AP49-201ENST00000492925 468 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RPL30P5-201ENST00000494923 336 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC9P31274 SNORA31.3-201ENST00000516029 96 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 Y_RNA.689-201ENST00000516589 107 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RNU6-677P-201ENST00000516914 101 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 RNA5SP290-201ENST00000517133 127 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AP001893.2-201ENST00000526949 202 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC9P31274 AL365204.3-201ENST00000612448 685 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AC002076.2-201ENST00000617362 122 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AC027309.3-201ENST00000623419 351 ntBASIC3.16□□□□□ -1.9
HOXC9P31274 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC9P31274 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC9P31274 CUL1P1-201ENST00000509510 2425 ntBASIC3.15□□□□□ -1.9
HOXC9P31274 Y_RNA.6-201ENST00000362350 114 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms