Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC023141.12-201ENST00000512399 199 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 CASP1P1-201ENST00000526345 212 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA3O43365 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA3O43365 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 CYCSP39-201ENST00000565821 309 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 AC009318.2-201ENST00000610917 651 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 MIR8062-201ENST00000621515 85 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 AC005086.4-201ENST00000623065 213 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 AC112484.5-201ENST00000624189 228 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA3O43365 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
HOXA3O43365 MTND5P7-201ENST00000413558 1798 ntBASIC3.48□□□□□ -1.85
HOXA3O43365 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HOXA3O43365 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA3O43365 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 RNU6-227P-201ENST00000362865 103 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 Y_RNA.214-201ENST00000364201 112 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 Y_RNA.526-201ENST00000384572 110 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 SNORA69.1-201ENST00000390904 137 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 SAR1AP2-201ENST00000392696 594 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 PPIAP31-201ENST00000405422 495 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNA5SP36-201ENST00000410197 133 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNU2-71P-201ENST00000411395 189 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA3O43365 MTCO3P19-201ENST00000415864 321 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA3O43365 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA3O43365 Z74021.1-201ENST00000423610 407 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 RPL21P91-201ENST00000429231 479 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 USP9YP16-201ENST00000430287 407 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 NDUFB4P6-201ENST00000436819 366 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 AC079354.2-201ENST00000453523 154 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 USP9YP23-201ENST00000455085 407 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AC133473.1-201ENST00000455173 299 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RPL35AP15-201ENST00000468042 339 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 S100A11P1-201ENST00000477525 312 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RN7SL691P-201ENST00000494487 301 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 Y_RNA.668-201ENST00000516233 93 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNA5SP519-201ENST00000516480 119 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNU1-103P-201ENST00000516502 125 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNA5SP468-201ENST00000516782 93 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 RNU6-1183P-201ENST00000517054 60 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA3O43365 LINC00933-203ENST00000559812 219 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AMZ2P1-203ENST00000565833 850 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 MIR3690-201ENST00000580266 75 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXA3O43365 AC008962.1-201ENST00000605729 304 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA3O43365 AC062037.2-201ENST00000610137 73 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AL021997.2-201ENST00000615674 271 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA3O43365 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXA3O43365 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA3O43365 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXA3O43365 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA3O43365 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.47□□□□□ -1.85
HOXA3O43365 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
HOXA3O43365 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
HOXA3O43365 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXA3O43365 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA3O43365 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA3O43365 RNU6-78P-201ENST00000362897 107 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 Y_RNA.222-201ENST00000364264 102 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 RNU6-217P-201ENST00000384164 104 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 SNORA51.11-201ENST00000384442 131 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 MIR134-201ENST00000385258 73 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 U3.37-201ENST00000408528 213 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 ELOCP20-201ENST00000422460 345 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 COX6B1P7-201ENST00000430845 235 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA3O43365 AL451050.1-201ENST00000450126 415 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA3O43365 RPS26P28-201ENST00000470806 348 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 RPL23AP65-201ENST00000475608 468 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 RPL30P10-201ENST00000488148 337 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA3O43365 VWA8P1-201ENST00000510889 176 ntBASIC3.46□□□□□ -1.86
HOXA3O43365 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA3O43365 RNY3P15-201ENST00000516297 97 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms