Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 HMGB3P12-201ENST00000438745 556 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 RPS15AP9-201ENST00000439856 381 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AL606662.1-201ENST00000445763 553 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 KLF3P2-201ENST00000465138 268 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC004263.1-201ENST00000479327 332 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CLDN3O15551 AC104435.1-201ENST00000483483 166 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC023194.1-201ENST00000493084 308 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 RNU6-1315P-201ENST00000517187 99 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AL133241.1-201ENST00000556832 487 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 ZNF519P3-201ENST00000557158 1032 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC009127.3-201ENST00000570531 403 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC034229.4-201ENST00000607861 441 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC103710.2-201ENST00000609912 942 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.35□□□□□ -2.03
CLDN3O15551 AC091953.2-201ENST00000623979 160 ntBASIC2.35□□□□□ -2.03
CLDN3O15551 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.35□□□□□ -2.03
CLDN3O15551 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
CLDN3O15551 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CLDN3O15551 RNU6-946P-201ENST00000383878 107 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 SNORA6-201ENST00000384033 151 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 RNU6-533P-201ENST00000384144 107 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 RN7SKP32-201ENST00000410167 303 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 RNU6-1025P-201ENST00000410629 104 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC092809.3-201ENST00000415453 231 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC005005.2-201ENST00000420779 380 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 MTCYBP39-201ENST00000437562 491 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.34□□□□□ -2.03
CLDN3O15551 AL078601.1-201ENST00000444542 271 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 RPL7P12-201ENST00000446719 750 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.34□□□□□ -2.03
CLDN3O15551 AC011005.2-201ENST00000487324 359 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC112204.1-201ENST00000502591 103 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.34□□□□□ -2.03
CLDN3O15551 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.34□□□□□ -2.03
CLDN3O15551 RNU6-914P-201ENST00000516749 109 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 CBX3P7-201ENST00000532876 502 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 PCMTD1P2-201ENST00000565017 355 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC012213.3-201ENST00000577199 777 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 MIR3118-1-201ENST00000581787 76 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC092953.2-201ENST00000608000 699 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 AC024933.1-201ENST00000608472 348 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.34□□□□□ -2.03
CLDN3O15551 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
CLDN3O15551 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CLDN3O15551 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CLDN3O15551 AL445523.1-201ENST00000451184 1362 ntBASIC2.34□□□□□ -2.04
CLDN3O15551 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
CLDN3O15551 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CLDN3O15551 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CLDN3O15551 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CLDN3O15551 RNU6-1214P-201ENST00000363650 109 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 RNU6-501P-201ENST00000364072 100 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 SNORA3A-201ENST00000364113 130 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 RNU4-28P-201ENST00000364739 141 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 SNORA4.3-201ENST00000365564 137 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 Y_RNA.534-201ENST00000384599 112 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 SNORA64-201ENST00000384674 134 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 MIR144-201ENST00000384886 86 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL133475.1-201ENST00000404414 305 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 RNU4-72P-201ENST00000410754 173 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.33□□□□□ -2.04
CLDN3O15551 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.33□□□□□ -2.04
CLDN3O15551 AC003685.2-201ENST00000422795 395 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 OOSP1P1-201ENST00000423265 274 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.33□□□□□ -2.04
CLDN3O15551 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 IPO7P1-201ENST00000442031 636 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 AL606517.1-201ENST00000446914 387 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL118520.1-201ENST00000450770 291 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 AC112771.1-201ENST00000463581 102 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 MTND2P14-201ENST00000482139 351 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 RPS29P21-201ENST00000496272 170 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 CKS1BP2-201ENST00000497342 240 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.33□□□□□ -2.04
CLDN3O15551 AL355816.2-201ENST00000610049 647 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.33□□□□□ -2.04
CLDN3O15551 MIR219B-201ENST00000637023 88 ntBASIC2.33□□□□□ -2.04
CLDN3O15551 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CLDN3O15551 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CLDN3O15551 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.32□□□□□ -2.04
CLDN3O15551 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CLDN3O15551 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms