Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-827P-201ENST00000365553 106 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-1074P-201ENST00000383995 104 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-700P-201ENST00000391043 107 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-1203P-201ENST00000410703 110 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 MYL8P-204ENST00000431574 518 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 USP9YP7-201ENST00000436723 430 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 USP9YP32-201ENST00000452432 430 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 HSPE1P6-201ENST00000479457 291 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 AL132838.2-201ENST00000492041 314 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 RN7SL604P-201ENST00000492589 296 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-911P-201ENST00000516523 104 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 MIR5696-201ENST00000578474 85 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 MIR1273C-201ENST00000578669 77 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 AC009779.6-201ENST00000603972 165 ntBASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP3Q9Y3E7 OR4G2P-202ENST00000641004 1759 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.785-201ENST00000384290 109 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 SNORA37-201ENST00000384504 129 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.555-201ENST00000384673 110 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 MIR1179-201ENST00000408703 91 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL513331.1-201ENST00000411908 397 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL096701.2-201ENST00000416920 238 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC091390.3-201ENST00000426478 338 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC087650.1-201ENST00000431445 468 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 NDUFB1P2-201ENST00000449477 176 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 ABCF2P2-201ENST00000450549 296 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC108145.1-201ENST00000503770 153 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-182P-201ENST00000516970 105 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 SNORA81.3-201ENST00000517283 198 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL355877.2-201ENST00000603670 358 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 AL360181.4-201ENST00000621752 134 ntBASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.2□□□□□ -1.58
CHMP3Q9Y3E7 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.33-201ENST00000362591 102 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 RNU5A-1-201ENST00000362698 116 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 RNU1-76P-201ENST00000362903 159 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.274-201ENST00000364714 101 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-1025P-201ENST00000410629 104 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 SNORD56-201ENST00000413522 71 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 MTCO3P29-201ENST00000432119 779 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 AC022795.1-201ENST00000473808 480 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 AL121603.1-201ENST00000553815 142 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 AC106785.1-201ENST00000565935 262 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 AL161798.1-201ENST00000604630 131 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 AL139811.1-201ENST00000424779 2299 ntBASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CHMP3Q9Y3E7 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 snoU2_19.2-201ENST00000363024 80 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.458-201ENST00000384240 102 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 MIR548H3-201ENST00000408771 118 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 SNORA11-201ENST00000408789 128 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 HIGD1AP2-201ENST00000446367 280 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 AC010469.2-201ENST00000496412 480 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 AC074250.1-201ENST00000511117 192 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 AC022968.1-201ENST00000567372 442 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 MIR6875-201ENST00000617506 72 ntBASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.18□□□□□ -1.58
CHMP3Q9Y3E7 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms