Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC012119.1-201ENST00000603184 222 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC005858.4-201ENST00000623191 700 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.33-201ENST00000362591 102 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 HMGB1P18-201ENST00000438801 619 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 MRPL50P4-201ENST00000446432 475 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 RNU7-66P-201ENST00000459469 62 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 HMGB1P30-201ENST00000492455 606 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AP002812.1-201ENST00000495378 474 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 SUMO2P6-201ENST00000505273 288 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP217-201ENST00000515959 91 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 RNU1-45P-201ENST00000517191 141 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC023632.4-201ENST00000517783 191 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AP003122.3-201ENST00000526316 255 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC084851.1-201ENST00000529105 249 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 CTHRC1P1-201ENST00000605383 469 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AL132765.2-201ENST00000610812 351 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC104237.2-201ENST00000612456 443 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 RMST_7.1-201ENST00000621935 268 ntBASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
LIMCH1Q9UPQ0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AL049641.1-201ENST00000441055 1948 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 RNU4-73P-201ENST00000363164 141 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.212-201ENST00000364177 102 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 U3.42-201ENST00000408746 214 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AL158156.1-201ENST00000422509 473 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC092047.1-201ENST00000424997 240 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 HMGB3P8-201ENST00000449709 577 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 HMGN2P16-201ENST00000456802 261 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AMD1P1-201ENST00000457220 922 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.691-201ENST00000516611 103 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC068657.1-201ENST00000520807 306 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AP000889.2-201ENST00000532684 490 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC006130.2-201ENST00000586202 326 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AL110115.1-201ENST00000614396 364 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC091903.1-201ENST00000624322 454 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 AC112487.2-201ENST00000637950 304 ntBASIC3.84□□□□□ -1.79
LIMCH1Q9UPQ0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
LIMCH1Q9UPQ0 AC118273.1-201ENST00000525324 3006 ntBASIC3.84□□□□□ -1.8
LIMCH1Q9UPQ0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
LIMCH1Q9UPQ0 FAM35BP-202ENST00000497389 3337 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC091152.2-201ENST00000591628 2569 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-254P-201ENST00000363377 107 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 Y_RNA.301-201ENST00000364990 103 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 MIR554-201ENST00000384874 96 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 EI24P2-201ENST00000397776 1076 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RPS4XP7-201ENST00000406274 780 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 TMEM167AP1-201ENST00000423409 219 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RPS27P29-201ENST00000463110 252 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RN7SL542P-201ENST00000467147 294 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RPS23P3-201ENST00000470993 430 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC009901.1-201ENST00000506703 541 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 RNU6-1069P-201ENST00000516612 133 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AC069113.1-201ENST00000517763 267 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 SCOCP1-201ENST00000554676 349 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 MIR1254-2-201ENST00000579553 63 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 MIR4276-201ENST00000584832 70 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 AL162713.1-201ENST00000604480 262 ntBASIC3.83□□□□□ -1.8
LIMCH1Q9UPQ0 ATP1B3P1-201ENST00000605365 821 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms