Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR3162-201ENST00000581818 82 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 MIR4635-201ENST00000583759 79 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AC093648.1-201ENST00000623546 606 ntBASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CPSF3Q9UKF6 AL161431.1-201ENST00000618966 4205 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-181P-201ENST00000363225 107 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU4-24P-201ENST00000364565 139 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RN7SKP226-201ENST00000364912 300 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 Y_RNA.367-201ENST00000365544 101 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-108P-201ENST00000365558 107 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-74P-201ENST00000384235 107 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 ARL5AP4-201ENST00000430731 512 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RPS15AP7-201ENST00000439294 405 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 FABP5P13-201ENST00000452144 328 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 GSTA11P-201ENST00000452866 669 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 C1DP4-201ENST00000455429 424 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RPS27AP10-201ENST00000496103 208 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC109927.2-201ENST00000506416 303 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC096725.1-201ENST00000514266 313 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-445P-201ENST00000516949 107 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-410P-201ENST00000517006 107 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC090136.1-201ENST00000520009 240 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC024909.2-201ENST00000553035 286 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AL391840.1-201ENST00000571144 367 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 MTND1P15-201ENST00000579262 949 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC103810.1-201ENST00000579873 453 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 MIR4672-201ENST00000583126 81 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC098848.2-201ENST00000588023 330 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AC006023.1-201ENST00000603944 259 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RPL23AP88-201ENST00000605759 454 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 MIR15A-201ENST00000607334 83 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 AL512643.1-201ENST00000635735 524 ntBASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CPSF3Q9UKF6 RNU6-61P-201ENST00000365528 109 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 SNORA4.3-201ENST00000365564 137 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 SET-203ENST00000372688 801 ntTSL 2 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 RNU1-109P-201ENST00000383960 147 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 RNU1-73P-201ENST00000383971 164 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 SNORD88.1-201ENST00000408684 91 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 BX682237.1-201ENST00000415016 335 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 USP9YP14-201ENST00000430663 563 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 RPS15AP9-201ENST00000439856 381 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC126389.1-201ENST00000477436 290 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 MTCO3P7-201ENST00000510008 774 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 RN7SKP298-201ENST00000515950 94 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 MTCYBP20-201ENST00000524239 1129 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 RPL12P50-201ENST00000603116 116 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AL355877.2-201ENST00000603670 358 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC012409.4-201ENST00000612923 249 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC138649.3-201ENST00000622154 254 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 MIR6733-201ENST00000635723 61 ntBASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.85□□□□□ -1.95
CPSF3Q9UKF6 AC103710.2-202ENST00000641454 2853 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MIR1-2-201ENST00000384961 85 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC023141.4-201ENST00000412031 328 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 RPLP0P7-201ENST00000416050 667 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MTCO2P11-201ENST00000431069 680 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AL591704.1-201ENST00000432574 275 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC079781.2-201ENST00000446424 169 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 MRPL50P4-201ENST00000446432 475 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 RPL23AP11-201ENST00000475260 469 ntBASIC2.84□□□□□ -1.95
CPSF3Q9UKF6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms