Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL161734.1-201ENST00000609720 557 ntBASIC2.44□□□□□ -2.02
LHX3Q9UBR4 AL589743.7-201ENST00000612637 233 ntBASIC2.44□□□□□ -2.02
LHX3Q9UBR4 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.44□□□□□ -2.02
LHX3Q9UBR4 AC022079.1-201ENST00000621546 602 ntBASIC2.44□□□□□ -2.02
LHX3Q9UBR4 MIR1291-201ENST00000627649 87 ntBASIC2.44□□□□□ -2.02
LHX3Q9UBR4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.44□□□□□ -2.02
LHX3Q9UBR4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
LHX3Q9UBR4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LHX3Q9UBR4 AC092447.7-201ENST00000422212 1621 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 RNY4P34-201ENST00000364779 95 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 SNORA41-201ENST00000384675 132 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 SNORA40.3-201ENST00000390964 122 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC127391.1-201ENST00000411737 98 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 HMGN1P14-201ENST00000412459 517 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL161651.1-201ENST00000440882 223 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL033528.1-201ENST00000453780 140 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC233279.1-201ENST00000455300 423 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 RAP1BP2-201ENST00000478270 544 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 RN7SL636P-201ENST00000497504 294 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC109927.2-201ENST00000506416 303 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC026436.1-201ENST00000510537 270 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 RNU6-572P-201ENST00000516724 80 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 SNORA31.18-201ENST00000517043 134 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 OR5B19P-201ENST00000531766 928 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 MIR3117-201ENST00000584034 78 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC007938.3-201ENST00000604965 623 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 MIR15A-201ENST00000607334 83 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC046143.2-201ENST00000609789 160 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL133173.2-201ENST00000614270 90 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL359547.2-201ENST00000615810 418 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 AC025034.2-201ENST00000623264 286 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 TEX21P-201ENST00000447107 1476 ntBASIC2.43□□□□□ -2.02
LHX3Q9UBR4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
LHX3Q9UBR4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 U8.3-201ENST00000363321 132 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 SNORA20.2-201ENST00000383922 131 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 MIR558-201ENST00000384920 94 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AL356057.2-201ENST00000403318 432 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 RNU2-39P-201ENST00000410604 198 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 RNU6-195P-201ENST00000411352 109 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC009518.2-201ENST00000418056 731 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 MED13P1-201ENST00000428342 171 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC104850.1-201ENST00000435940 476 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AL022238.1-201ENST00000442557 355 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC008571.1-201ENST00000467232 300 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 RPS27P27-201ENST00000498779 255 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 GZMAP1-201ENST00000503054 631 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 TBCAP3-201ENST00000512475 312 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 Vault.3-201ENST00000516676 95 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 RNU6-1220P-201ENST00000517126 108 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC022616.3-201ENST00000523940 148 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC021269.2-201ENST00000532318 330 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AL157871.3-201ENST00000557231 293 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 MIR1273C-201ENST00000578669 77 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC025811.1-201ENST00000604312 472 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC135507.1-201ENST00000607214 561 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC067747.1-201ENST00000608026 250 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC073114.1-201ENST00000612027 490 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC110994.2-201ENST00000635481 492 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 CU459211.1-201ENST00000635667 749 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
LHX3Q9UBR4 AC010329.5-201ENST00000623497 2174 ntBASIC2.42□□□□□ -2.02
LHX3Q9UBR4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 FGF7P2-201ENST00000332473 296 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 RNU4-91P-201ENST00000364778 135 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 RNU6-1025P-201ENST00000410629 104 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 BX682237.1-201ENST00000415016 335 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC114491.1-201ENST00000416095 246 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms