Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MTND1P36-201ENST00000522384 936 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 CYCSP27-201ENST00000527643 293 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 RPS3AP4-201ENST00000555161 764 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC026464.5-201ENST00000562497 722 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC234778.2-201ENST00000566241 354 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AL354943.1-201ENST00000572103 781 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC026271.5-201ENST00000577873 130 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 RPL30P11-203ENST00000598995 310 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 RNU6-91P-201ENST00000607774 107 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC106052.1-201ENST00000608029 497 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AL512643.1-201ENST00000635735 524 ntBASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.64□□□□□ -2.15
VCX3AQ9NNX9 AC006020.1-201ENST00000420179 1854 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC138393.1-203ENST00000327086 343 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 SNORD115-3-201ENST00000363100 82 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 RNU6-7-201ENST00000364784 107 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 RNU6-8-201ENST00000365467 107 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 SNORA70.4-201ENST00000365509 134 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 OR9R1P-201ENST00000412200 877 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC104982.1-201ENST00000478775 574 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 RNA5SP356-201ENST00000515972 94 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 RNU6-667P-201ENST00000517186 102 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AP001646.1-201ENST00000527936 915 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 SRGNP1-201ENST00000603392 451 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 BCRP9-201ENST00000605312 388 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 AC106858.1-201ENST00000637497 429 ntBASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
VCX3AQ9NNX9 Y_RNA.465-201ENST00000384293 102 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 RNU6-817P-201ENST00000391083 104 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 SNORA40C-201ENST00000391285 128 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 MIR1283-2-201ENST00000408621 87 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 RNU2-48P-201ENST00000410694 191 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 POLHP1-201ENST00000411806 470 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC006512.1-201ENST00000468816 291 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 RNA5SP216-201ENST00000516111 123 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC135279.1-201ENST00000543493 504 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 APAF1-207ENST00000547743 651 ntTSL 3 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC136619.2-201ENST00000563361 631 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC025678.1-201ENST00000567861 338 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 SNRPGP17-201ENST00000603780 214 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC018638.7-201ENST00000605836 1114 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
VCX3AQ9NNX9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 SNORA4.3-201ENST00000365564 137 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 RNU6-166P-201ENST00000384371 107 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 RNU1-57P-201ENST00000384491 166 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 Y_RNA.534-201ENST00000384599 112 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 SNORA40.19-201ENST00000390846 128 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 RNU6-955P-201ENST00000410497 104 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 RNU6-1140P-201ENST00000410517 106 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC092017.2-201ENST00000427600 362 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 LARP1BP3-201ENST00000437229 869 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AL078601.1-201ENST00000444542 271 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AL109933.2-201ENST00000452651 260 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC108059.3-201ENST00000456388 214 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 MTND1P3-201ENST00000484956 952 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC010587.2-201ENST00000511727 448 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC107393.1-201ENST00000512403 346 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 RNU6-970P-201ENST00000516312 107 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 DUXAP5-201ENST00000529668 529 ntBASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.61□□□□□ -2.15
VCX3AQ9NNX9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms