Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 C1DP1-201ENST00000426049 402 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.83□□□□□ -2.12
USP42Q9H9J4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.83□□□□□ -2.12
USP42Q9H9J4 ELOCP14-201ENST00000428070 331 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 ELOCP7-201ENST00000439968 331 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 ARPC3P5-201ENST00000448802 534 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.83□□□□□ -2.12
USP42Q9H9J4 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.83□□□□□ -2.12
USP42Q9H9J4 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP42Q9H9J4 RNA5SP112-201ENST00000515937 99 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 RNU2-19P-201ENST00000517288 84 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AC008749.1-201ENST00000597650 306 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.83□□□□□ -2.12
USP42Q9H9J4 MTCYBP22-201ENST00000603788 447 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AC104763.3-201ENST00000613765 618 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AL512506.1-201ENST00000613918 449 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AL445264.1-201ENST00000621719 171 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 AC006927.2-201ENST00000639256 389 ntBASIC1.83□□□□□ -2.12
USP42Q9H9J4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.83□□□□□ -2.12
USP42Q9H9J4 RNU5B-4P-201ENST00000363508 111 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 RNU6-359P-201ENST00000365466 108 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 RNU6-658P-201ENST00000384606 106 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 RNU6-754P-201ENST00000391166 107 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 MTCYBP42-201ENST00000444653 1130 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 RNA5SP233-201ENST00000459153 113 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AP001324.2-201ENST00000461163 319 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AC092902.1-201ENST00000486999 259 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 MTND5P13-201ENST00000513046 1079 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AP003497.1-201ENST00000528472 562 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 MIR4529-201ENST00000578110 78 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 SDR42E1P4-201ENST00000620894 481 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AC091932.3-201ENST00000624223 323 ntBASIC1.82□□□□□ -2.12
USP42Q9H9J4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.82□□□□□ -2.12
USP42Q9H9J4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USP42Q9H9J4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 RNU6-778P-201ENST00000363269 103 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AL590084.2-201ENST00000401481 382 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 RPS6P15-201ENST00000431996 751 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 NANOGP2-201ENST00000435391 727 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 MTND1P28-201ENST00000435623 950 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 RPL35AP22-201ENST00000436855 335 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 MTND1P9-201ENST00000453775 944 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 RPL37P6-201ENST00000460682 294 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 SMURF2P1-201ENST00000514992 481 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 RNU6-150P-201ENST00000516237 95 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC006199.1-201ENST00000548728 219 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC010928.2-201ENST00000588017 287 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC078899.2-201ENST00000595282 212 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC136443.5-201ENST00000603741 370 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AL121652.1-201ENST00000608851 448 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 uc_338.14-201ENST00000613162 166 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC079416.3-201ENST00000624479 549 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 AC091895.1-201ENST00000624494 256 ntBASIC1.81□□□□□ -2.12
USP42Q9H9J4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USP42Q9H9J4 ZNF702P-202ENST00000434269 1966 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 MIR96-201ENST00000362288 78 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 MIR1304-201ENST00000408243 91 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 RPL26P27-201ENST00000414397 437 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 EDDM3CP-201ENST00000415977 425 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 AC007435.1-201ENST00000421086 415 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 PTGES3P1-201ENST00000439531 483 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 RPL18AP17-201ENST00000455326 198 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 RPL22P13-201ENST00000493291 347 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
USP42Q9H9J4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 RNU2-44P-201ENST00000516795 194 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 SNORD19.2-201ENST00000516978 73 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AP004607.1-201ENST00000524456 203 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.8□□□□□ -2.12
USP42Q9H9J4 MIR3912-201ENST00000577566 105 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AC004987.4-201ENST00000603383 338 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AC091152.3-201ENST00000604227 325 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AC009237.15-201ENST00000610252 501 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 AL079343.1-201ENST00000572358 1771 ntBASIC1.8□□□□□ -2.12
USP42Q9H9J4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
USP42Q9H9J4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
USP42Q9H9J4 RNU6-223P-201ENST00000362830 107 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 MTND1P21-201ENST00000412991 285 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 GTF2IP7-202ENST00000436677 309 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 COX7BP2-201ENST00000437976 242 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC016691.1-201ENST00000441321 413 ntBASIC1.79□□□□□ -2.12
USP42Q9H9J4 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.79□□□□□ -2.12
USP42Q9H9J4 HMGN2P10-201ENST00000448085 265 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms