Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 MTCYBP6-201ENST00000441810 138 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 FO393415.2-201ENST00000480085 343 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 CYCSP29-201ENST00000533731 318 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AC007224.1-201ENST00000564410 144 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AP001836.1-201ENST00000604675 523 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 XIST_intron.1-201ENST00000619444 68 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AC138627.2-201ENST00000624202 601 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 MIR492-201ENST00000638676 116 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 MTND5P9-201ENST00000503854 1755 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AC010889.1-201ENST00000566193 2666 ntBASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRAIPQ9BWF2 AC027290.2-201ENST00000623210 18662 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 MIR331-201ENST00000362302 94 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 Y_RNA.422-201ENST00000384054 114 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 Y_RNA.428-201ENST00000384078 102 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RNU6-474P-201ENST00000384243 107 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RNU6-843P-201ENST00000384454 104 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RNU6-748P-201ENST00000384648 107 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RNU6-750P-201ENST00000390946 107 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 MTHFD2P2-201ENST00000407725 247 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 AL118496.2-201ENST00000448300 230 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RNA5SP446-201ENST00000515955 82 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 AC020661.2-201ENST00000560114 134 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 IPO5P1-202ENST00000600039 287 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 AL356157.2-201ENST00000605122 111 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 HMGB1P24-202ENST00000615653 685 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 MIR8058-201ENST00000615737 89 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 AC140479.6-201ENST00000633535 357 ntBASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRAIPQ9BWF2 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 Y_RNA.123-201ENST00000363338 102 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 AC105137.1-201ENST00000484355 562 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 RPL17P19-201ENST00000489069 552 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 RN7SL691P-201ENST00000494487 301 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 MRPL49P2-201ENST00000521066 465 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 ANP32BP3-201ENST00000559213 706 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 uc_338.22-201ENST00000622722 187 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRAIPQ9BWF2 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 ZNF299P-201ENST00000406845 1804 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AC007823.1-201ENST00000569932 1566 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 RNA5SP139-201ENST00000364340 117 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 RNU1-140P-201ENST00000365040 165 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 RPS26P8-201ENST00000393490 348 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AL160275.2-201ENST00000412010 394 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 EIF1AXP1-201ENST00000419267 435 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AL132765.1-201ENST00000434165 553 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AC099799.1-201ENST00000439809 192 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 SNRPGP7-201ENST00000469016 106 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AL163540.1-201ENST00000485382 386 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 GZMAP1-201ENST00000503054 631 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AC097462.2-201ENST00000504623 481 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AC105137.2-201ENST00000569073 466 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 MIR4644-201ENST00000579929 84 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 AC091178.1-203ENST00000584586 279 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 SNRPGP17-201ENST00000603780 214 ntBASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
TRAIPQ9BWF2 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
TRAIPQ9BWF2 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms