Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AP000907.1-201ENST00000428428 510 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AL162151.2-201ENST00000448875 158 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AP000870.1-201ENST00000472927 406 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC067942.3-201ENST00000512025 362 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 RNA5SP73-201ENST00000516744 108 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 MIR4472-2-201ENST00000582069 67 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC096772.1-201ENST00000609146 564 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 AC240442.1-201ENST00000616055 283 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 MTND5P6-201ENST00000422338 1798 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNA5SP191-201ENST00000362585 102 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNU5B-2P-201ENST00000363036 113 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNY3P4-201ENST00000384428 101 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNU6-19P-201ENST00000384718 107 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 MIR215-201ENST00000384858 110 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNU1-82P-201ENST00000390851 165 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNU6-1140P-201ENST00000410517 106 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RPL37P18-201ENST00000411602 243 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC244670.1-201ENST00000436879 112 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 ISCUP1-201ENST00000454451 448 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 snoU13.6-201ENST00000458785 104 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC107626.1-201ENST00000471084 183 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 TRBVB-201ENST00000477100 408 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RNU1-6P-201ENST00000516290 144 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.680-201ENST00000516441 93 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC023157.2-201ENST00000540596 141 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 MIR4659A-201ENST00000580269 81 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AL049539.1-201ENST00000611964 459 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 MIR6798-201ENST00000612887 67 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC100827.5-201ENST00000615883 426 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 MIR8069-1-201ENST00000616627 86 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 MIR8069-2-201ENST00000621412 86 ntBASIC3.69□□□□□ -1.82
CCDC140Q96MF4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC140Q96MF4 AC007256.1-201ENST00000392253 2765 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ZNF826P-207ENST00000622273 1910 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC083843.3-201ENST00000623679 2186 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 RNU6-1301P-201ENST00000362724 104 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SNORD115-32-201ENST00000364079 82 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 RNA5SP252-201ENST00000391131 119 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AL590762.2-201ENST00000395798 571 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AL079342.1-201ENST00000401460 267 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AL592291.1-201ENST00000403830 352 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AP000567.1-201ENST00000406413 156 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 RNA5SP390-201ENST00000410191 113 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 RNA5SP113-201ENST00000410486 84 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SDAD1P3-201ENST00000427380 333 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 WARS2P1-201ENST00000429678 537 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC006466.1-201ENST00000438721 289 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC079168.2-201ENST00000453977 416 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 RPS5P7-201ENST00000456664 608 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 U3.44-201ENST00000458938 192 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SNRPGP3-201ENST00000469405 227 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SCARNA22-201ENST00000503991 125 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 CKS1BP7-201ENST00000522230 235 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms