Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL355297.2-201ENST00000604792 129 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AC126118.1-201ENST00000607744 628 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AC096772.1-201ENST00000609146 564 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AL161423.1-201ENST00000613700 262 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AL355493.4-201ENST00000618530 292 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AC012640.5-201ENST00000623897 319 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 AC092656.1-203ENST00000624134 423 ntBASIC2.62□□□□□ -1.99
VMP1Q96GC9 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.62□□□□□ -1.99
VMP1Q96GC9 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.62□□□□□ -1.99
VMP1Q96GC9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
VMP1Q96GC9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VMP1Q96GC9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.61□□□□□ -1.99
VMP1Q96GC9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.61□□□□□ -1.99
VMP1Q96GC9 RNU6-858P-201ENST00000362436 107 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 CIR1P3-201ENST00000405137 479 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC114491.1-201ENST00000416095 246 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AL356583.2-201ENST00000426536 280 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 PGBD4P3-201ENST00000440731 581 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 UBE2D3P4-201ENST00000441973 436 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VMP1Q96GC9 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 EPS15P1-201ENST00000448836 336 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 AL049873.1-201ENST00000480540 376 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC140059.1-201ENST00000489238 361 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 SNORA31.11-201ENST00000516528 139 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 EEF1A1P37-201ENST00000522748 715 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 OR5AQ1P-201ENST00000527596 927 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 GTF3AP2-201ENST00000557014 266 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC060766.3-201ENST00000591442 263 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AL022154.1-201ENST00000604698 785 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AL033523.1-201ENST00000605153 153 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 MIR6840-201ENST00000611937 71 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC131159.1-201ENST00000621854 213 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 AC017037.3-201ENST00000625016 472 ntBASIC2.61□□□□□ -1.99
VMP1Q96GC9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.61□□□□□ -1.99
VMP1Q96GC9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VMP1Q96GC9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VMP1Q96GC9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
VMP1Q96GC9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 MIR6073-201ENST00000352083 89 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 MIR412-201ENST00000362142 91 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 MIR26A1-201ENST00000362205 77 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 SNORA75B-201ENST00000384053 137 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 RNU6-39P-201ENST00000384344 107 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AL355497.1-201ENST00000406262 551 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 U3.37-201ENST00000408528 213 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 RNU2-8P-201ENST00000410727 190 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 Y_RNA.623-201ENST00000411128 95 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC016831.2-201ENST00000417179 352 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 AL365338.1-201ENST00000422282 858 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 MTND4P20-201ENST00000424125 869 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 RPS24P1-201ENST00000438550 371 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 MRPL50P4-201ENST00000446432 475 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC012308.1-201ENST00000451232 178 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC117503.1-201ENST00000472241 394 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 RPL30P6-201ENST00000475925 342 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC118273.2-201ENST00000532092 465 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC027176.1-201ENST00000560204 514 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC025678.1-201ENST00000567861 338 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 MIR5694-201ENST00000581190 76 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VMP1Q96GC9 HMGN1P30-201ENST00000589286 268 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 AC104237.2-201ENST00000612456 443 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 U6.42-201ENST00000618440 107 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 CR381653.2-201ENST00000624041 768 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 SCARNA15.3-201ENST00000626315 122 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 SCARNA4.1-201ENST00000628597 123 ntBASIC2.6□□□□□ -1.99
VMP1Q96GC9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.6□□□□□ -1.99
VMP1Q96GC9 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VMP1Q96GC9 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VMP1Q96GC9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VMP1Q96GC9 AC092593.1-201ENST00000515413 1815 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VMP1Q96GC9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.59□□□□□ -1.99
VMP1Q96GC9 RNU5E-1-201ENST00000362477 120 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 SNORA5B-201ENST00000363786 132 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 RNU1-91P-201ENST00000364746 163 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VMP1Q96GC9 DEFA7P-201ENST00000382676 285 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 RNU1-148P-201ENST00000384472 162 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 SNORD23.1-201ENST00000408212 104 ntBASIC2.59□□□□□ -1.99
VMP1Q96GC9 RNU2-39P-201ENST00000410604 198 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 245 ms