Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 HMGB1P14-201ENST00000557424 591 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 MIR1254-2-201ENST00000579553 63 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC113195.1-201ENST00000579952 141 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL138889.2-201ENST00000603883 242 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC104695.3-201ENST00000604052 296 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AC018889.1-201ENST00000605372 397 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 HMGB1P24-202ENST00000615653 685 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL512643.1-201ENST00000635735 524 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 Z99571.1-201ENST00000636677 394 ntBASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CLIP3Q96DZ5 AL136164.4-201ENST00000625013 2135 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL359693.1-201ENST00000614959 2407 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.80-201ENST00000362996 102 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RNU6-593P-201ENST00000364716 112 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RNU6-1127P-201ENST00000384580 107 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 MIR301A-201ENST00000385261 86 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL590704.1-201ENST00000402856 794 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL160275.3-201ENST00000423876 471 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC093151.1-201ENST00000427711 313 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RPL23AP89-201ENST00000439324 255 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 GSTA11P-201ENST00000452866 669 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RNA5SP246-201ENST00000458909 119 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RPL30P14-201ENST00000482744 348 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RPL32P34-201ENST00000486380 400 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC110794.1-201ENST00000505816 425 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC006445.2-201ENST00000510061 472 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC107222.1-201ENST00000510899 637 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RNU6-189P-201ENST00000516120 101 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC009812.2-201ENST00000517657 457 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC087854.1-201ENST00000519706 414 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 MIR5047-201ENST00000579212 100 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC006157.1-201ENST00000611750 366 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC107871.2-201ENST00000612894 502 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC068831.7-201ENST00000616954 363 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 MIR6875-201ENST00000617506 72 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 AC092608.2-201ENST00000624427 218 ntBASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CLIP3Q96DZ5 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 SNORD3E-201ENST00000362899 217 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.404-201ENST00000383978 102 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RNU6-217P-201ENST00000384164 104 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 Y_RNA.455-201ENST00000384230 98 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RNU6-140P-201ENST00000384566 108 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RNU2-3P-201ENST00000410144 191 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 SUMO1P3-201ENST00000439961 304 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RPS15AP27-201ENST00000449183 343 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 HMGB3P8-201ENST00000449709 577 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 ABCF2P2-201ENST00000450549 296 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RN7SL132P-201ENST00000478131 296 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 MRPS35P2-201ENST00000508242 191 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 HIGD1AP13-201ENST00000509878 289 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC006499.6-201ENST00000511169 607 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC104136.1-201ENST00000512969 394 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RNU6-635P-201ENST00000516651 102 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RNU6-1016P-201ENST00000516689 94 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AP005902.1-201ENST00000521358 186 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 BNIP3P16-201ENST00000589779 534 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AL365434.2-201ENST00000607979 234 ntBASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
CLIP3Q96DZ5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms