Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC114781.5-201ENST00000615297 108 ntBASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 IGHVIII-44-202ENST00000636235 289 ntBASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 MIR4679-1-201ENST00000637619 75 ntBASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 U4.7-201ENST00000638126 106 ntBASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SH3RF1Q7Z6J0 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 RNU6-318P-201ENST00000384283 103 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 MIR153-1-201ENST00000384914 90 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 MIR32-201ENST00000384965 70 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 MIR153-2-201ENST00000385225 87 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 MIR921-201ENST00000401133 56 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 Z74021.1-201ENST00000423610 407 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC079168.2-201ENST00000453977 416 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC091179.1-201ENST00000461606 579 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 RPL23AP75-201ENST00000491601 451 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SNORA31.19-201ENST00000517079 126 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 RNA5SP290-201ENST00000517133 127 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC008749.1-201ENST00000597650 306 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AL672167.1-203ENST00000641299 2975 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC104260.2-201ENST00000623551 3497 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 AL109809.4-201ENST00000603520 2185 ntBASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SH3RF1Q7Z6J0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 PCAT14-202ENST00000627127 3935 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 SNORD115-32-201ENST00000364079 82 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RN7SKP224-201ENST00000364140 325 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.262-201ENST00000364641 102 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-356P-201ENST00000384140 107 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.488-201ENST00000384403 102 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-541P-201ENST00000384709 110 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU1-82P-201ENST00000390851 165 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU1-139P-201ENST00000391307 165 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 AC011742.1-201ENST00000431448 434 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 POLR2KP2-201ENST00000438155 177 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RPS20P22-201ENST00000473700 357 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU6-1114P-201ENST00000516022 107 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 RNU1-6P-201ENST00000516290 144 ntBASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SH3RF1Q7Z6J0 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC026523.2-201ENST00000625039 7739 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.261-201ENST00000364631 102 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 Y_RNA.400-201ENST00000383963 111 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 SNORA70C-201ENST00000384538 135 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 SNORA40C-201ENST00000391285 128 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 RNU5E-9P-201ENST00000411164 104 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC024067.1-201ENST00000426199 223 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC091390.3-201ENST00000426478 338 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AL162591.2-201ENST00000449634 317 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AP000870.1-201ENST00000472927 406 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 RNA5SP446-201ENST00000515955 82 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 MIR4423-201ENST00000580922 80 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 RPL23AP88-201ENST00000605759 454 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC140113.4-201ENST00000622087 222 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC006001.4-201ENST00000622243 395 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC099506.2-201ENST00000623074 221 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 AC025031.4-201ENST00000621248 3271 ntBASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.26□□□□□ -1.57
SH3RF1Q7Z6J0 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms