Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL022718.1-201ENST00000412004 84 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 TAAR7P-201ENST00000436141 242 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 snoU13.19-201ENST00000459148 104 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 OR1M4P-201ENST00000589199 287 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC011374.2-201ENST00000607135 526 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC004775.1-201ENST00000607389 753 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RNU6-1243P-201ENST00000364028 107 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RNU6-712P-201ENST00000410558 100 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RPP40P1-201ENST00000426762 456 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC093155.1-201ENST00000440164 826 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 MTCO3P17-201ENST00000443775 513 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RPL31P60-201ENST00000478450 367 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC027575.1-201ENST00000481064 460 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RPL30P5-201ENST00000494923 336 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC147055.4-201ENST00000504399 745 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AC093510.2-201ENST00000562820 896 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.57□□□□□ -2.32
CHD9Q3L8U1 DBF4P1-201ENST00000412976 1892 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 AL589743.1-201ENST00000551932 2712 ntBASIC0.57□□□□□ -2.32
CHD9Q3L8U1 RNU6-673P-201ENST00000365084 104 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 MIR1290-201ENST00000408735 78 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 RPS15AP5-201ENST00000436276 388 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 TPTE2P6-202ENST00000445572 1007 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 C1DP5-201ENST00000525775 383 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC084033.1-201ENST00000550830 633 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 MIR4514-201ENST00000581410 57 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 CYP2C61P-201ENST00000604072 290 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 SNORD14A-201ENST00000606526 91 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC242628.1-201ENST00000606810 391 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AL355802.3-201ENST00000607571 545 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC007349.4-201ENST00000608114 532 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC021851.1-201ENST00000608537 1082 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC090116.1-201ENST00000615679 446 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 MIR6718-201ENST00000616153 80 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AL590396.2-201ENST00000636511 1041 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 RNA5SP258-201ENST00000362750 119 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 SNORA68.1-201ENST00000364537 132 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 SNORA40.19-201ENST00000390846 128 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 MTATP6P31-201ENST00000406985 692 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC078974.1-201ENST00000411597 223 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 VN1R42P-201ENST00000424651 344 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AP003355.1-201ENST00000518956 587 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC021646.1-201ENST00000605469 484 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC011939.3-201ENST00000613686 466 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC018926.3-201ENST00000618841 406 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AC073308.1-201ENST00000623696 305 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 AL109659.3-201ENST00000624985 950 ntBASIC0.56□□□□□ -2.32
CHD9Q3L8U1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
CHD9Q3L8U1 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNA5SP240-201ENST00000365355 128 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU6-1226P-201ENST00000384317 107 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU6-1035P-201ENST00000384477 107 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 MIR329-1-201ENST00000385028 80 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU1-98P-201ENST00000458992 160 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU6-1004P-201ENST00000516584 111 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 EIF4A1P12-201ENST00000551910 141 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 BNIP3P26-201ENST00000600827 554 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL096840.1-201ENST00000603287 93 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AP002791.1-201ENST00000623291 381 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNA5SP125-201ENST00000364843 120 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU6-48P-201ENST00000384161 107 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU2-15P-201ENST00000410692 191 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RPS24P7-201ENST00000416921 246 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 SNRPEP7-201ENST00000438350 220 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms