Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 TRAV32-201ENST00000553993 340 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 HSPE1P5-201ENST00000561489 272 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC109446.1-201ENST00000566172 220 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 MIR4286-201ENST00000580651 93 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC136601.2-201ENST00000604356 474 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC004805.2-201ENST00000605382 482 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AL354798.1-201ENST00000622505 329 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 USP8P1-201ENST00000494673 3183 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA4Q00056 AC007785.2-201ENST00000598627 1916 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA4Q00056 Y_RNA.48-201ENST00000362710 103 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 RNA5SP124-201ENST00000362739 110 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 Y_RNA.144-201ENST00000363521 113 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 Y_RNA.158-201ENST00000363651 101 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 SNORD14B-201ENST00000364533 90 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 RNU6-741P-201ENST00000383889 107 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 U1.1-201ENST00000384101 164 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 RNU6-790P-201ENST00000384479 105 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 MIR493-201ENST00000385254 89 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA4Q00056 Y_RNA.605-201ENST00000410577 105 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 Y_RNA.623-201ENST00000411128 95 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA4Q00056 BX276092.3-201ENST00000424182 230 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC008267.5-201ENST00000424928 265 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AL358176.2-201ENST00000425769 204 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC092017.2-201ENST00000427600 362 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC093151.1-201ENST00000427711 313 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AL133396.1-201ENST00000432048 687 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA4Q00056 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA4Q00056 GSTA11P-201ENST00000452866 669 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 RPL12P25-201ENST00000455592 494 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA4Q00056 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA4Q00056 TRAV28-201ENST00000557548 323 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC090877.1-201ENST00000561418 344 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA4Q00056 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA4Q00056 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA4Q00056 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXA4Q00056 AC005014.2-201ENST00000607795 599 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 AL591516.1-201ENST00000611326 274 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 MIR4727-201ENST00000622232 55 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA4Q00056 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 UBE3AP2-201ENST00000429033 2259 ntBASIC3.23□□□□□ -1.89
HOXA4Q00056 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA4Q00056 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
HOXA4Q00056 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA4Q00056 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
HOXA4Q00056 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA4Q00056 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 ZNF807-201ENST00000328088 1707 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA4Q00056 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA4Q00056 Y_RNA.364-201ENST00000365532 101 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 SNORA41-201ENST00000384675 132 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 U8.11-201ENST00000384699 133 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 U8.12-201ENST00000384701 133 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 MIR10A-201ENST00000385043 110 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 RNU6-985P-201ENST00000410182 104 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 RNU6-55P-201ENST00000411092 107 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AC096664.2-201ENST00000411843 406 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 SNORD56-201ENST00000413522 71 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AL590383.1-201ENST00000428602 75 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA4Q00056 FTH1P6-201ENST00000430768 320 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 NDUFB1P2-201ENST00000449477 176 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AL031274.1-201ENST00000450334 232 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXA4Q00056 U8.18-201ENST00000459285 133 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 AC068781.1-201ENST00000488231 618 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 RPL21P13-201ENST00000488305 481 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 TRBV12-2-201ENST00000489763 344 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA4Q00056 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA4Q00056 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXA4Q00056 SNORA31.19-201ENST00000517079 126 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 RNA5SP291-201ENST00000517222 105 ntBASIC3.22□□□□□ -1.89
HOXA4Q00056 RN7SKP289-201ENST00000517244 295 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms