Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SNORA4.3-201ENST00000365564 137 ntBASIC2.64□□□□□ -1.99
SOX3P41225 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
SOX3P41225 Y_RNA.619-201ENST00000410951 90 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.64□□□□□ -1.99
SOX3P41225 AC080125.1-201ENST00000414888 684 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.64□□□□□ -1.99
SOX3P41225 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.64□□□□□ -1.99
SOX3P41225 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.64□□□□□ -1.99
SOX3P41225 CALM2P2-201ENST00000428512 440 ntBASIC2.64□□□□□ -1.99
SOX3P41225 RPL21P40-201ENST00000428586 483 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AC092473.1-201ENST00000441098 221 ntBASIC2.64□□□□□ -1.99
SOX3P41225 RPL39P40-201ENST00000445481 146 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.64□□□□□ -1.99
SOX3P41225 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.64□□□□□ -1.99
SOX3P41225 AC010099.1-201ENST00000455434 375 ntBASIC2.64□□□□□ -1.99
SOX3P41225 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.64□□□□□ -1.99
SOX3P41225 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.64□□□□□ -1.99
SOX3P41225 RPS15AP34-201ENST00000487776 387 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AC104806.1-201ENST00000508720 308 ntBASIC2.64□□□□□ -1.99
SOX3P41225 HIGD1AP13-201ENST00000509878 289 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AC091826.1-201ENST00000514065 313 ntBASIC2.64□□□□□ -1.99
SOX3P41225 RNU6-123P-201ENST00000516163 102 ntBASIC2.64□□□□□ -1.99
SOX3P41225 RNA5SP367-201ENST00000516557 118 ntBASIC2.64□□□□□ -1.99
SOX3P41225 SCARNA13-201ENST00000516672 275 ntBASIC2.64□□□□□ -1.99
SOX3P41225 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.64□□□□□ -1.99
SOX3P41225 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.64□□□□□ -1.99
SOX3P41225 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.64□□□□□ -1.99
SOX3P41225 CYCSP39-201ENST00000565821 309 ntBASIC2.64□□□□□ -1.99
SOX3P41225 DEFB131E-202ENST00000602581 683 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AL158032.1-201ENST00000605401 106 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AP001596.2-201ENST00000608410 312 ntBASIC2.64□□□□□ -1.99
SOX3P41225 U4.5-201ENST00000617137 123 ntBASIC2.64□□□□□ -1.99
SOX3P41225 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.64□□□□□ -1.99
SOX3P41225 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SOX3P41225 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SOX3P41225 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.63□□□□□ -1.99
SOX3P41225 GABRG2-229ENST00000641017 3628 ntBASIC2.63□□□□□ -1.99
SOX3P41225 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.63□□□□□ -1.99
SOX3P41225 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.63□□□□□ -1.99
SOX3P41225 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.63□□□□□ -1.99
SOX3P41225 AL139276.1-201ENST00000311910 1001 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RNU1-35P-201ENST00000362782 153 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RNU6-1322P-201ENST00000364309 107 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RNU6-1029P-201ENST00000384109 107 ntBASIC2.63□□□□□ -1.99
SOX3P41225 Y_RNA.554-201ENST00000384672 102 ntBASIC2.63□□□□□ -1.99
SOX3P41225 MIR301A-201ENST00000385261 86 ntBASIC2.63□□□□□ -1.99
SOX3P41225 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
SOX3P41225 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.63□□□□□ -1.99
SOX3P41225 MRPL50P2-201ENST00000416821 482 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AC099548.1-201ENST00000421443 426 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AL645937.1-202ENST00000421799 937 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.63□□□□□ -1.99
SOX3P41225 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 SAR1AP4-201ENST00000429225 591 ntBASIC2.63□□□□□ -1.99
SOX3P41225 C8orf59P1-201ENST00000429930 303 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AL606489.2-201ENST00000433886 234 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RPL12P25-201ENST00000455592 494 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RPS29P15-201ENST00000458329 171 ntBASIC2.63□□□□□ -1.99
SOX3P41225 GMFBP1-201ENST00000467831 427 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RPS27AP9-201ENST00000477681 438 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RN7SL297P-201ENST00000483161 293 ntBASIC2.63□□□□□ -1.99
SOX3P41225 SUMO2P6-201ENST00000505273 288 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AC117522.3-201ENST00000507974 584 ntBASIC2.63□□□□□ -1.99
SOX3P41225 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.63□□□□□ -1.99
SOX3P41225 Y_RNA.693-201ENST00000516641 110 ntBASIC2.63□□□□□ -1.99
SOX3P41225 RNA5SP165-201ENST00000517142 115 ntBASIC2.63□□□□□ -1.99
SOX3P41225 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 RANP3-201ENST00000530970 276 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AL512310.1-201ENST00000548639 172 ntBASIC2.63□□□□□ -1.99
SOX3P41225 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.63□□□□□ -1.99
SOX3P41225 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.63□□□□□ -1.99
SOX3P41225 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 MTCO3P13-201ENST00000577757 781 ntBASIC2.63□□□□□ -1.99
SOX3P41225 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.63□□□□□ -1.99
SOX3P41225 AC008752.3-201ENST00000588113 712 ntBASIC2.63□□□□□ -1.99
SOX3P41225 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.63□□□□□ -1.99
SOX3P41225 Z99571.1-201ENST00000636677 394 ntBASIC2.63□□□□□ -1.99
SOX3P41225 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
SOX3P41225 MTND4P5-201ENST00000435821 1374 ntBASIC2.62□□□□□ -1.99
SOX3P41225 MAPK10-322ENST00000641485 4530 ntBASIC2.62□□□□□ -1.99
SOX3P41225 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SOX3P41225 AC010680.1-201ENST00000590024 3590 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC027514.1-201ENST00000588561 1603 ntBASIC2.62□□□□□ -1.99
SOX3P41225 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 SNORA5B-201ENST00000363786 132 ntBASIC2.62□□□□□ -1.99
SOX3P41225 Y_RNA.372-201ENST00000365599 102 ntBASIC2.62□□□□□ -1.99
SOX3P41225 SNORA26.7-201ENST00000391288 122 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL590002.1-201ENST00000406554 418 ntBASIC2.62□□□□□ -1.99
SOX3P41225 RNU2-68P-201ENST00000410878 191 ntBASIC2.62□□□□□ -1.99
SOX3P41225 FCF1P9-201ENST00000412546 282 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 AL160275.3-201ENST00000423876 471 ntBASIC2.62□□□□□ -1.99
SOX3P41225 RPS3AP44-201ENST00000425466 790 ntBASIC2.62□□□□□ -1.99
SOX3P41225 MTCO3P30-201ENST00000426425 670 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms