Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.21□□□□□ -1.9
SHMT1P34896 Y_RNA.689-201ENST00000516589 107 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 RNA5SP503-201ENST00000517047 117 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC022690.1-201ENST00000526681 550 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.21□□□□□ -1.9
SHMT1P34896 MTATP6P3-201ENST00000581686 676 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC025165.5-201ENST00000602802 578 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC098826.3-201ENST00000603823 466 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC007621.1-201ENST00000604544 437 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC022893.3-201ENST00000607665 437 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AL020991.1-201ENST00000612314 373 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 AC027309.3-201ENST00000623419 351 ntBASIC3.21□□□□□ -1.9
SHMT1P34896 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHMT1P34896 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.2□□□□□ -1.9
SHMT1P34896 Y_RNA.245-201ENST00000364493 95 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 RNA5SP126-201ENST00000365092 109 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 SNORD115-7-201ENST00000365306 82 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 Y_RNA.402-201ENST00000383972 102 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AL451074.5-201ENST00000415894 435 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC092047.1-201ENST00000424997 240 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.2□□□□□ -1.9
SHMT1P34896 AL606489.2-201ENST00000433886 234 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AL591212.2-201ENST00000433923 257 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 DPPA3P1-201ENST00000448050 469 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 MTND1P18-201ENST00000448191 573 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 FDX1P2-201ENST00000450769 375 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC003071.1-201ENST00000451219 789 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 RPS3P1-201ENST00000456781 192 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 RNU6-261P-201ENST00000459506 102 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.2□□□□□ -1.9
SHMT1P34896 AP004217.1-201ENST00000480579 346 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 SNORA40.12-201ENST00000516329 111 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 RNU6-143P-201ENST00000516942 93 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.2□□□□□ -1.9
SHMT1P34896 RANP3-201ENST00000530970 276 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.2□□□□□ -1.9
SHMT1P34896 BNIP3P9-201ENST00000603714 553 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AL158032.1-201ENST00000605401 106 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC012409.4-201ENST00000612923 249 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC130324.3-201ENST00000614165 542 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC002076.2-201ENST00000617362 122 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AC011155.2-201ENST00000623202 216 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 AL160394.1-201ENST00000624765 724 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 MIR1321-201ENST00000637766 79 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.2□□□□□ -1.9
SHMT1P34896 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.2□□□□□ -1.9
SHMT1P34896 AL049641.1-201ENST00000441055 1948 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SHMT1P34896 MTND5P7-201ENST00000413558 1798 ntBASIC3.2□□□□□ -1.9
SHMT1P34896 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHMT1P34896 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHMT1P34896 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHMT1P34896 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SHMT1P34896 RNU4-82P-201ENST00000362443 140 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RNY4P14-201ENST00000363656 96 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 Y_RNA.450-201ENST00000384198 113 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 Y_RNA.576-201ENST00000384781 102 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 MIR196B-201ENST00000384852 84 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RNU6-780P-201ENST00000391030 104 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RPS4XP3-201ENST00000398541 413 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 AC080125.1-201ENST00000414888 684 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RPS29P15-201ENST00000458329 171 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RNU6-420P-201ENST00000458780 107 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 GMFBP1-201ENST00000467831 427 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AC104806.1-201ENST00000508720 308 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 RNA5SP471-201ENST00000516971 106 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 RNA5SP290-201ENST00000517133 127 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.19□□□□□ -1.9
SHMT1P34896 AK6P1-201ENST00000540219 478 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 AC008521.1-201ENST00000587471 187 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AL161798.1-201ENST00000604630 131 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AC093788.1-201ENST00000609356 927 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 MIR6076-201ENST00000617521 113 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 AL354950.2-201ENST00000617939 290 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.19□□□□□ -1.9
SHMT1P34896 AC243829.7-201ENST00000633081 225 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHMT1P34896 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHMT1P34896 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHMT1P34896 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
SHMT1P34896 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHMT1P34896 AC103710.2-202ENST00000641454 2853 ntBASIC3.19□□□□□ -1.9
SHMT1P34896 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHMT1P34896 AL359693.1-201ENST00000614959 2407 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
SHMT1P34896 MIR26A1-201ENST00000362205 77 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-1287P-201ENST00000362914 107 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-512P-201ENST00000364438 103 ntBASIC3.18□□□□□ -1.9
SHMT1P34896 RNU6-996P-201ENST00000365438 107 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 157.5 ms