Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC008536.2-201ENST00000607284 349 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AF250324.2-201ENST00000608299 610 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 AC068831.7-201ENST00000616954 363 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXC9P31274 AC124864.2-201ENST00000624736 186 ntBASIC3.21□□□□□ -1.9
HOXC9P31274 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC9P31274 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC9P31274 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXC9P31274 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC9P31274 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
HOXC9P31274 RNU6-1097P-201ENST00000363586 107 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 Y_RNA.159-201ENST00000363674 87 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 RNU6-960P-201ENST00000364056 120 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 SNORA51.4-201ENST00000364993 124 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC068050.1-201ENST00000394891 380 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXC9P31274 MTATP6P18-201ENST00000417994 673 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 TMEM167AP1-201ENST00000423409 219 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 ISCA1P1-201ENST00000426679 387 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 MTCO2P19-201ENST00000427513 598 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 DPPA2P1-201ENST00000428060 556 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 C8orf59P1-201ENST00000429930 303 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 SNRPEP4-201ENST00000435815 279 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 TAAR7P-201ENST00000436141 242 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 HIGD1AP11-201ENST00000438361 280 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 MTND4P25-201ENST00000441039 533 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 PIGFP3-201ENST00000441918 722 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXC9P31274 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC9P31274 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HOXC9P31274 CASP1P1-201ENST00000526345 212 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC022690.1-201ENST00000526681 550 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AP003033.1-201ENST00000527244 415 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC9P31274 MIR1273D-201ENST00000577266 86 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AL158032.1-201ENST00000605401 106 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AC073534.2-201ENST00000620377 381 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 AL157786.1-207ENST00000627771 695 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 SEPT14P19-203ENST00000633205 211 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 MTND4P5-201ENST00000435821 1374 ntBASIC3.2□□□□□ -1.9
HOXC9P31274 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HOXC9P31274 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
HOXC9P31274 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HOXC9P31274 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC9P31274 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 AC010733.2-201ENST00000589496 5702 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 OR56A5-201ENST00000340110 738 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 SNORA62.1-201ENST00000364287 154 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 RNU1-73P-201ENST00000383971 164 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 RNU6-74P-201ENST00000384235 107 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 MTCO3P40-201ENST00000392516 676 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 Y_RNA.599-201ENST00000410489 109 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 Z85995.1-201ENST00000415547 335 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC9P31274 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC9P31274 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC9P31274 BNIP3P2-201ENST00000441221 577 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXC9P31274 AL353705.4-201ENST00000449661 238 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC9P31274 RPL37P6-201ENST00000460682 294 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC006512.1-201ENST00000468816 291 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 RPL7P5-201ENST00000471472 736 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 HMGN2P13-201ENST00000476476 274 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 RN7SL283P-201ENST00000489055 303 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC116562.3-201ENST00000506136 177 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC068587.5-201ENST00000528506 175 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 OR5B19P-201ENST00000531766 928 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 OR5AL2P-201ENST00000532185 920 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC9P31274 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 RPS3AP4-201ENST00000555161 764 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC9P31274 AC009163.5-201ENST00000575421 637 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXC9P31274 AC098826.3-201ENST00000603823 466 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 AC008962.1-201ENST00000605729 304 ntBASIC3.19□□□□□ -1.9
HOXC9P31274 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC9P31274 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC9P31274 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC9P31274 Y_RNA.372-201ENST00000365599 102 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC9P31274 RNU6-1103P-201ENST00000384150 107 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 RNU6-190P-201ENST00000384154 102 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 SNORA24.1-201ENST00000384401 135 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 MIR504-201ENST00000385065 83 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXC9P31274 CALM2P3-201ENST00000400429 449 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 FAT1P1-201ENST00000406588 507 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 SNORD88.1-201ENST00000408684 91 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 AC092809.3-201ENST00000415453 231 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 ZNF90P2-204ENST00000419323 1075 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 DPH3P2-201ENST00000422618 250 ntBASIC3.18□□□□□ -1.9
HOXC9P31274 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC9P31274 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms