Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AL031667.3-201ENST00000620124 655 ntBASIC1.57□□□□□ -2.16
CPSF4O95639 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.57□□□□□ -2.16
CPSF4O95639 AP002782.1-201ENST00000623107 614 ntBASIC1.57□□□□□ -2.16
CPSF4O95639 AC079416.3-201ENST00000624479 549 ntBASIC1.57□□□□□ -2.16
CPSF4O95639 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CPSF4O95639 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CPSF4O95639 AC010889.1-201ENST00000566193 2666 ntBASIC1.57□□□□□ -2.16
CPSF4O95639 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.57□□□□□ -2.16
CPSF4O95639 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CPSF4O95639 Y_RNA.18-201ENST00000362461 102 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 Y_RNA.46-201ENST00000362695 102 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 SNORD114-1-201ENST00000362705 72 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 RNU6-1284P-201ENST00000363701 100 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 SNORA3A-201ENST00000364113 130 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.56□□□□□ -2.16
CPSF4O95639 RPL26P27-201ENST00000414397 437 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 NPM1P11-201ENST00000417106 855 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 ZNF90P2-204ENST00000419323 1075 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC104651.1-201ENST00000427559 735 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 HMGB1P9-201ENST00000429856 646 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 RPL36AP53-201ENST00000432891 316 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 TIMM9P1-201ENST00000436122 256 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC139453.3-201ENST00000493276 369 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CPSF4O95639 AP006587.4-201ENST00000526053 529 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.56□□□□□ -2.16
CPSF4O95639 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC084851.1-201ENST00000529105 249 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC023050.2-201ENST00000544968 387 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC090888.2-201ENST00000559765 1144 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC009127.3-201ENST00000570531 403 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.56□□□□□ -2.16
CPSF4O95639 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.56□□□□□ -2.16
CPSF4O95639 AC018714.1-201ENST00000605028 208 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC108747.1-201ENST00000609508 535 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC068944.2-201ENST00000610373 403 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 TUSC7.1-201ENST00000610969 165 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AL589743.7-201ENST00000612637 233 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 DUSP12P1-201ENST00000612874 516 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 AC012640.5-201ENST00000623897 319 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.56□□□□□ -2.16
CPSF4O95639 MTND4P23-201ENST00000447723 1363 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
CPSF4O95639 AC004520.1-201ENST00000608362 1413 ntBASIC1.56□□□□□ -2.16
CPSF4O95639 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 RNU6-660P-201ENST00000364566 109 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 Z98749.2-208ENST00000381646 500 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 RNU6-701P-201ENST00000384059 107 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 RNU6-14P-201ENST00000384630 106 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 U8.14-201ENST00000390843 143 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AL021407.1-201ENST00000404531 386 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC096649.2-201ENST00000416186 393 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AL353729.1-201ENST00000425044 720 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF4O95639 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 AL354941.1-201ENST00000438600 464 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 OSTCP8-201ENST00000445117 448 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF4O95639 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF4O95639 SNORD11.1-201ENST00000459482 85 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AL121769.1-201ENST00000469473 401 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 BZW1P2-201ENST00000473537 826 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 TRBV1-201ENST00000476502 284 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF4O95639 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF4O95639 SNORA31.6-201ENST00000516241 130 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 AK6P1-201ENST00000540219 478 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC123904.2-201ENST00000548059 300 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 NACAP3-201ENST00000552100 481 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
CPSF4O95639 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF4O95639 AC024619.4-201ENST00000580924 316 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 AC005261.5-201ENST00000596280 355 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC112187.2-201ENST00000604345 283 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF4O95639 AC090970.3-201ENST00000612566 866 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF4O95639 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF4O95639 MIR3199-2-201ENST00000636243 86 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 AC080128.1-201ENST00000474389 1917 ntBASIC1.55□□□□□ -2.16
CPSF4O95639 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.55□□□□□ -2.16
CPSF4O95639 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CPSF4O95639 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CPSF4O95639 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CPSF4O95639 Y_RNA.97-201ENST00000363094 102 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CPSF4O95639 RPS20P2-201ENST00000402520 389 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms