Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNU6-390P-201ENST00000516259 103 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 RNU6-970P-201ENST00000516312 107 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 AP005597.4-201ENST00000526762 229 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 DEFB131D-201ENST00000526803 184 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.21□□□□□ -2.22
SDCBPO00560 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.21□□□□□ -2.22
SDCBPO00560 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.21□□□□□ -2.22
SDCBPO00560 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SDCBPO00560 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.21□□□□□ -2.22
SDCBPO00560 MIR4285-201ENST00000581001 85 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.21□□□□□ -2.22
SDCBPO00560 BNIP3P23-201ENST00000599655 511 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 AP002802.2-201ENST00000605877 235 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 MIR7974-201ENST00000615835 79 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 AC104985.3-201ENST00000623479 597 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 AC091953.2-201ENST00000623979 160 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 AC231657.1-201ENST00000624313 397 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 Z99571.1-201ENST00000636677 394 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
SDCBPO00560 AL079343.1-201ENST00000572358 1771 ntBASIC1.21□□□□□ -2.22
SDCBPO00560 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.21□□□□□ -2.22
SDCBPO00560 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
SDCBPO00560 RNU6-289P-201ENST00000364093 107 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 RNU6-512P-201ENST00000364438 103 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 SNORA8-201ENST00000384574 139 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 MIR518A2-201ENST00000384966 87 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SDCBPO00560 OR51A5P-201ENST00000415429 942 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.2□□□□□ -2.22
SDCBPO00560 AL160275.3-201ENST00000423876 471 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 ISCA1P1-201ENST00000426679 387 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC244035.1-201ENST00000430042 390 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.2□□□□□ -2.22
SDCBPO00560 RPL36AP53-201ENST00000432891 316 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 SNRPGP13-201ENST00000442212 177 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC017099.1-201ENST00000448261 1028 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.2□□□□□ -2.22
SDCBPO00560 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.2□□□□□ -2.22
SDCBPO00560 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.2□□□□□ -2.22
SDCBPO00560 AP003049.1-201ENST00000529418 457 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SDCBPO00560 LINC00933-203ENST00000559812 219 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.2□□□□□ -2.22
SDCBPO00560 AC126365.2-201ENST00000580630 379 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.2□□□□□ -2.22
SDCBPO00560 MTCYBP22-201ENST00000603788 447 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 SEPT7P9-203ENST00000604116 343 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AC009974.1-201ENST00000608881 455 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
SDCBPO00560 MIR5739-201ENST00000619803 80 ntBASIC1.2□□□□□ -2.22
SDCBPO00560 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.2□□□□□ -2.22
SDCBPO00560 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SDCBPO00560 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.19□□□□□ -2.22
SDCBPO00560 NACAP2-201ENST00000318548 624 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 RNU6-188P-201ENST00000364207 107 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 RNU6-60P-201ENST00000364792 103 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AL133475.1-201ENST00000404414 305 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
SDCBPO00560 USP9YP21-201ENST00000420603 432 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.19□□□□□ -2.22
SDCBPO00560 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.19□□□□□ -2.22
SDCBPO00560 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.19□□□□□ -2.22
SDCBPO00560 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.19□□□□□ -2.22
SDCBPO00560 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.19□□□□□ -2.22
SDCBPO00560 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.19□□□□□ -2.22
SDCBPO00560 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.19□□□□□ -2.22
SDCBPO00560 DUXAP1-201ENST00000556632 463 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AL132657.2-201ENST00000564417 358 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AC012213.3-201ENST00000577199 777 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AL713866.2-201ENST00000603579 219 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AC011939.3-201ENST00000613686 466 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 AC241585.2-209ENST00000638217 143 ntBASIC1.19□□□□□ -2.22
SDCBPO00560 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SDCBPO00560 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SDCBPO00560 RNU1-23P-201ENST00000363361 144 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.18□□□□□ -2.22
SDCBPO00560 MIR95-201ENST00000385072 81 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 SNORA67.5-201ENST00000391036 107 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.18□□□□□ -2.22
SDCBPO00560 AC097463.2-201ENST00000421074 142 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 GPM6BP2-201ENST00000432046 144 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 HMGB1P18-201ENST00000438801 619 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.18□□□□□ -2.22
SDCBPO00560 GPM6BP1-201ENST00000446387 144 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 EEF1E1P1-201ENST00000446998 430 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC1.18□□□□□ -2.22
SDCBPO00560 AC112771.1-201ENST00000463581 102 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.18□□□□□ -2.22
SDCBPO00560 RPL36AP48-201ENST00000485521 314 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 CKS1BP2-201ENST00000497342 240 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.18□□□□□ -2.22
SDCBPO00560 AC110760.3-202ENST00000515177 371 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 RNU6-678P-201ENST00000516832 109 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 RN7SKP258-201ENST00000517151 304 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.18□□□□□ -2.22
SDCBPO00560 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
SDCBPO00560 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.18□□□□□ -2.22
SDCBPO00560 ARL2BPP2-201ENST00000550907 489 ntBASIC1.18□□□□□ -2.22
SDCBPO00560 AL133153.1-201ENST00000557756 303 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms