Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 API5P2-201ENST00000397055 1498 ntBASIC3.13□□□□□ -1.91
SIX4Q9UIU6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.13□□□□□ -1.91
SIX4Q9UIU6 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 OR4G2P-202ENST00000641004 1759 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC103988.1-201ENST00000566382 2177 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC096644.4-201ENST00000563417 2912 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AL139276.1-201ENST00000311910 1001 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.86-201ENST00000363020 111 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 SNORA18.3-201ENST00000384122 132 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RNU6-14P-201ENST00000384630 106 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 SNORD37.1-201ENST00000390968 65 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RN7SKP140-201ENST00000411196 284 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC092809.3-201ENST00000415453 231 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC022018.1-201ENST00000430685 241 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AL135938.1-201ENST00000443141 297 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 MTND3P10-201ENST00000450967 341 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RPS20P20-201ENST00000460498 340 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RPS27P29-201ENST00000463110 252 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RPL21P8-201ENST00000465083 535 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AP002884.2-201ENST00000471647 395 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 MTCO2P30-201ENST00000503662 364 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC083906.5-201ENST00000503722 328 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RBBP4P6-201ENST00000508098 202 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 SCGB1D5P-201ENST00000515134 247 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 RN7SKP258-201ENST00000517151 304 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AL355836.1-201ENST00000555951 870 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 CYCSP39-201ENST00000565821 309 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 BNIP3P9-201ENST00000603714 553 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AP001486.3-201ENST00000615334 372 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 AC006504.8-201ENST00000621046 635 ntBASIC3.12□□□□□ -1.91
SIX4Q9UIU6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX4Q9UIU6 OR4G1P-203ENST00000641984 1631 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 SNORA9.2-201ENST00000365361 133 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 MIR514A1-201ENST00000385133 98 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL451054.2-201ENST00000420896 202 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 TRIAP1P1-201ENST00000427062 225 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL121601.2-201ENST00000438019 707 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC107083.1-201ENST00000439643 279 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 MTND5P20-201ENST00000448677 143 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 FABP5P13-201ENST00000452144 328 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 RPL39P36-201ENST00000490784 156 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC104806.1-201ENST00000508720 308 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC098591.2-201ENST00000510152 315 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 RNU6-507P-201ENST00000516045 100 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.702-201ENST00000516843 96 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 SNORD60.2-201ENST00000516883 86 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 CENPUP1-201ENST00000526649 1202 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 RPL23AP84-201ENST00000571193 464 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 MIR5583-1-201ENST00000580941 59 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC008521.1-201ENST00000587471 187 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 BDH2P1-201ENST00000602288 736 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL160281.1-201ENST00000605307 311 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 BNIP3P10-201ENST00000605360 577 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC107294.3-201ENST00000609211 526 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AC012409.4-201ENST00000612923 249 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AP003122.6-201ENST00000623831 495 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 AL137003.2-201ENST00000606924 2538 ntBASIC3.11□□□□□ -1.91
SIX4Q9UIU6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX4Q9UIU6 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 Y_RNA.70-201ENST00000362886 110 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RNU6-190P-201ENST00000384154 102 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RNU6-851P-201ENST00000384565 107 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 NDUFB4P4-201ENST00000404822 243 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RNU6-193P-201ENST00000410977 107 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RPL21P111-201ENST00000418453 477 ntBASIC3.1□□□□□ -1.91
SIX4Q9UIU6 RPL7L1P10-201ENST00000427790 463 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms