Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR3160-1-201ENST00000577972 85 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC005899.2-201ENST00000584353 90 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC005034.5-201ENST00000604219 466 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC123912.5-201ENST00000605470 343 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AL591516.1-201ENST00000611326 274 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 SCARNA4-202ENST00000625402 129 ntBASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.02□□□□□ -1.77
TRIM39Q9HCM9 ZNF962P-201ENST00000443465 3140 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RNA5SP388-201ENST00000362584 119 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 SNORD35B-201ENST00000363660 87 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.162-201ENST00000363683 102 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.202-201ENST00000364083 110 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RNU6-1035P-201ENST00000384477 107 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RNU6-658P-201ENST00000384606 106 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RPL21P65-201ENST00000406094 466 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.646-201ENST00000410980 101 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AL030996.1-201ENST00000411430 235 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC093151.1-201ENST00000427711 313 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AL117339.2-201ENST00000430475 180 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC007389.2-201ENST00000434630 306 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 DAP3P1-201ENST00000441522 278 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 MTCO3P10-201ENST00000455912 772 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC128713.1-201ENST00000471495 306 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RNU1-103P-201ENST00000516502 125 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 RNU6-703P-201ENST00000516946 107 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC020661.2-201ENST00000560114 134 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 MIR3171-201ENST00000584270 74 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 AC002546.1-201ENST00000588041 2504 ntBASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM39Q9HCM9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 SRP72P2-201ENST00000344851 1979 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 MIR372-201ENST00000362225 67 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.151-201ENST00000363566 112 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.395-201ENST00000383945 109 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.422-201ENST00000384054 114 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 RNU6-692P-201ENST00000384496 107 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 RPL21P17-201ENST00000397467 475 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 SNORD56-201ENST00000413522 71 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 USMG5P1-201ENST00000425964 177 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 SNRPEP4-201ENST00000435815 279 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AL162151.2-201ENST00000448875 158 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.670-201ENST00000516255 105 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 OR8R1P-201ENST00000543943 764 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AC091516.1-201ENST00000549191 703 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 SYF2P1-201ENST00000550658 413 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 SNRPGP18-201ENST00000553000 214 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 MIR6868-201ENST00000611215 58 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 DLEU2_5.1-201ENST00000615567 84 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 AC002076.2-201ENST00000617362 122 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 MIR6076-201ENST00000617521 113 ntBASIC4□□□□□ -1.77
TRIM39Q9HCM9 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4□□□□□ -1.77
TRIM39Q9HCM9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM39Q9HCM9 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.2-201ENST00000362330 96 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNA5SP515-201ENST00000364570 118 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNU5E-7P-201ENST00000365290 117 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNA5SP283-201ENST00000365604 119 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNU6-628P-201ENST00000410675 107 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RPL17P36-201ENST00000420302 549 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RPL31P12-201ENST00000422587 358 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms