Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP502-201ENST00000362694 119 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.197-201ENST00000364004 102 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP51-201ENST00000364750 119 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-384P-201ENST00000364900 104 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-1329P-201ENST00000365664 107 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AL592148.1-201ENST00000413568 445 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AL035423.1-201ENST00000420331 213 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 MTND2P23-201ENST00000422990 651 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNU7-187P-201ENST00000458985 68 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RN7SL93P-201ENST00000463035 293 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP291-201ENST00000517222 105 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AP004242.1-201ENST00000533701 349 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AC018462.2-201ENST00000605375 395 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AC009229.3-201ENST00000608056 282 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 UBE2Q2P6-201ENST00000612666 153 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AL161423.1-201ENST00000613700 262 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AC040896.1-201ENST00000613819 479 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 AP000553.6-201ENST00000641242 118 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 MTND5P10-201ENST00000603719 1809 ntBASIC4□□□□□ -1.77
PCIF1Q9H4Z3 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4□□□□□ -1.77
PCIF1Q9H4Z3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 SNORD62.1-201ENST00000362541 86 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RNU1-18P-201ENST00000363062 164 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP322-201ENST00000363617 119 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.404-201ENST00000383978 102 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 MIR554-201ENST00000384874 96 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-328P-201ENST00000390887 106 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-308P-201ENST00000390957 107 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 U3.42-201ENST00000408746 214 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.594-201ENST00000410373 140 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RAB9AP3-201ENST00000412737 573 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 UBE2V1P4-201ENST00000425374 344 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 Z82210.1-201ENST00000440037 231 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 MTND4P19-201ENST00000446659 478 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 RAB9AP1-201ENST00000449393 573 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC133473.1-201ENST00000455173 299 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC090096.1-201ENST00000489168 390 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC139453.3-201ENST00000493276 369 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.670-201ENST00000516255 105 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 MTCO3P13-201ENST00000577757 781 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC007938.3-201ENST00000604965 623 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 uc_338.22-201ENST00000622722 187 ntBASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PCIF1Q9H4Z3 AC007390.2-201ENST00000606229 3803 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 MIR412-201ENST00000362142 91 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.31-201ENST00000362574 102 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 SNORD14B-201ENST00000364533 90 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 MIR325-201ENST00000385260 98 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 RPL21P17-201ENST00000397467 475 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AC007389.2-201ENST00000434630 306 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 NDUFB4P6-201ENST00000436819 366 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AL583843.1-201ENST00000456070 346 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 MIR2053-201ENST00000459295 91 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 RPL7P42-201ENST00000481005 679 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 HMGN1P11-201ENST00000508668 303 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.708-201ENST00000516950 96 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 RNA5SP165-201ENST00000517142 115 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AC025755.1-201ENST00000521306 278 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 OR1M4P-201ENST00000589199 287 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 CYP2C61P-201ENST00000604072 290 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AC136601.2-201ENST00000604356 474 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 AC133104.2-201ENST00000615272 193 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 CR392039.5-201ENST00000623201 510 ntBASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.98□□□□□ -1.77
PCIF1Q9H4Z3 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms