Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU7-23P-201ENST00000459465 62 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 RPL37P6-201ENST00000460682 294 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 RPS3AP17-201ENST00000472594 777 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC109927.2-201ENST00000506416 303 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC009901.1-201ENST00000506703 541 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 RPL37P25-201ENST00000507308 276 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.49□□□□□ -2.01
LIME1Q9H400 RNU6-914P-201ENST00000516749 109 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 RNU6-685P-201ENST00000517088 95 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AL391646.1-201ENST00000603860 190 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AL139286.2-201ENST00000606838 396 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 HULC.1-201ENST00000612720 240 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC130324.3-201ENST00000614165 542 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC025034.2-201ENST00000623264 286 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AP003122.6-201ENST00000623831 495 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.49□□□□□ -2.01
LIME1Q9H400 LRRC77P-213ENST00000637727 880 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AP003122.5-201ENST00000527668 3766 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RN7SKP226-201ENST00000364912 300 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RNU6-1042P-201ENST00000384204 107 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 MIR1-2-201ENST00000384961 85 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 MIR887-201ENST00000401258 79 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RNU6-387P-201ENST00000411331 105 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 MTCYBP5-201ENST00000423752 1135 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 SKA2P1-201ENST00000425592 390 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AL365496.1-201ENST00000426885 215 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 ARL5AP4-201ENST00000430731 512 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AL031183.1-201ENST00000457667 207 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 snoU13.28-201ENST00000459235 104 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RNU6-703P-201ENST00000516946 107 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RNA5SP165-201ENST00000517142 115 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 SNORA31.21-201ENST00000517180 77 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 RNU6-1315P-201ENST00000517187 99 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.48□□□□□ -2.01
LIME1Q9H400 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
LIME1Q9H400 MTCYBP20-201ENST00000524239 1129 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AP003392.2-201ENST00000527269 208 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 SUB1P2-201ENST00000556401 297 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC234778.2-201ENST00000566241 354 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AC007938.3-201ENST00000604965 623 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AP001596.2-201ENST00000608410 312 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AL020991.1-201ENST00000612314 373 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
LIME1Q9H400 AC139792.2-201ENST00000624218 587 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC005609.4-201ENST00000625071 447 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC103988.1-201ENST00000566382 2177 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 AC092447.7-201ENST00000422212 1621 ntBASIC2.48□□□□□ -2.01
LIME1Q9H400 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LIME1Q9H400 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIME1Q9H400 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
LIME1Q9H400 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU6-179P-201ENST00000363350 107 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU6-799P-201ENST00000363567 107 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU1-112P-201ENST00000364401 164 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU6-456P-201ENST00000384493 107 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU6-606P-201ENST00000384721 111 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 MIR181A2-201ENST00000384863 110 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 MIR34A-201ENST00000385130 110 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AL360182.1-201ENST00000397433 468 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNU2-68P-201ENST00000410878 191 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RNA5SP344-201ENST00000411081 104 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 RPL26P27-201ENST00000414397 437 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.47□□□□□ -2.01
LIME1Q9H400 MTATP6P18-201ENST00000417994 673 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC073464.1-201ENST00000429823 534 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RPL36AP53-201ENST00000432891 316 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.47□□□□□ -2.01
LIME1Q9H400 DDX3P2-201ENST00000446138 111 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC093899.1-201ENST00000457984 376 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC023194.1-201ENST00000493084 308 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC026801.1-201ENST00000497178 464 ntBASIC2.47□□□□□ -2.01
LIME1Q9H400 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.47□□□□□ -2.01
LIME1Q9H400 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.47□□□□□ -2.01
LIME1Q9H400 RN7SKP282-201ENST00000516824 299 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms