Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC093838.1-201ENST00000613014 469 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 TUG1_2.1-201ENST00000614234 87 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AL110115.1-201ENST00000614396 364 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 CR381653.2-201ENST00000624041 768 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC019226.1-201ENST00000625666 515 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC009812.4-201ENST00000569134 1805 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 Y_RNA.1-201ENST00000352915 104 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RNU6-1283P-201ENST00000365314 105 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 U8.9-201ENST00000365667 134 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RNU6-1074P-201ENST00000383995 104 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 MIR504-201ENST00000385065 83 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AL512633.1-201ENST00000399931 655 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RNU2-36P-201ENST00000410361 191 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RNU2-8P-201ENST00000410727 190 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 EIF1P1-201ENST00000421436 341 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC073464.1-201ENST00000429823 534 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC119618.1-201ENST00000434191 222 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RPL26P6-201ENST00000440913 438 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 PSPHP1-201ENST00000450062 261 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 snoU13.4-201ENST00000458916 104 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RN7SL499P-201ENST00000481141 276 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC009646.1-201ENST00000510455 318 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 RNU6-718P-201ENST00000516166 105 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AP001094.1-201ENST00000579805 193 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 GLUD1P4-201ENST00000590914 418 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 U4.5-201ENST00000617137 123 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 AP003122.6-201ENST00000623831 495 ntBASIC2.84□□□□□ -1.95
UPF3AQ9H1J1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.84□□□□□ -1.96
UPF3AQ9H1J1 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.84□□□□□ -1.96
UPF3AQ9H1J1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
UPF3AQ9H1J1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.84□□□□□ -1.96
UPF3AQ9H1J1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.96
UPF3AQ9H1J1 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 MTCO1P9-201ENST00000505577 1534 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.381-201ENST00000365666 102 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RNU1-39P-201ENST00000383897 165 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RNU6-432P-201ENST00000384196 109 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RNU6-74P-201ENST00000384235 107 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 MIR181A1-201ENST00000385026 110 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL21P75-201ENST00000396599 483 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL21P28-201ENST00000401418 483 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL109755.1-201ENST00000401791 649 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL592114.1-201ENST00000403842 483 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RNA5SP425-201ENST00000410336 112 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RN7SKP223-201ENST00000410582 62 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL135786.1-201ENST00000415892 214 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 UBE2FP1-201ENST00000416536 447 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 CCDC58P2-201ENST00000417131 366 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 USP9YP20-201ENST00000419224 558 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 ELOCP4-201ENST00000420090 333 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 USP9YP18-201ENST00000425912 695 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC004866.2-201ENST00000438285 481 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 MTATP6P30-201ENST00000443540 664 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL39P40-201ENST00000445481 146 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AL136380.1-201ENST00000447970 162 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC234775.1-201ENST00000454247 670 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC108059.3-201ENST00000456388 214 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL21P39-201ENST00000463605 483 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL21P93-201ENST00000480465 489 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC233702.1-201ENST00000482905 502 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC087190.1-201ENST00000484462 480 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC093591.1-201ENST00000491435 481 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 RPL21P16-201ENST00000495531 483 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 SNORA31.1-201ENST00000515993 133 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 SNORA31.5-201ENST00000516190 133 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC100870.1-201ENST00000522035 505 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AP001893.2-201ENST00000526949 202 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC123904.3-201ENST00000547218 814 ntBASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.83□□□□□ -1.96
UPF3AQ9H1J1 AC025449.1-201ENST00000603896 529 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms