Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 Y_RNA.474-201ENST00000384341 102 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RPL21P3-201ENST00000395517 478 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AL445189.1-201ENST00000405722 338 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 SNORA11-201ENST00000408789 128 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RN7SKP123-201ENST00000410732 291 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU7-66P-201ENST00000459469 62 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC146507.2-201ENST00000460608 476 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RN7SL542P-201ENST00000467147 294 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AL049874.1-201ENST00000489560 388 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU6-864P-201ENST00000516256 108 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU6-273P-201ENST00000516937 96 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC090136.1-201ENST00000520009 240 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC005476.1-201ENST00000554427 397 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 MIR3942-201ENST00000585264 109 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC006130.2-201ENST00000586202 326 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC016727.1-205ENST00000605437 569 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC022893.3-201ENST00000607665 437 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AP003400.5-201ENST00000624827 617 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 AC012442.3-202ENST00000636742 206 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.09□□□□□ -1.92
CLIP4Q8N3C7 AC121333.1-201ENST00000567488 2709 ntBASIC3.09□□□□□ -1.92
CLIP4Q8N3C7 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
CLIP4Q8N3C7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CLIP4Q8N3C7 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 DEFB109C-201ENST00000382575 264 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 DEFB109B-201ENST00000382656 264 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 Y_RNA.384-201ENST00000383909 102 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RNU6-393P-201ENST00000384475 107 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RNA5SP219-201ENST00000390940 113 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RNU6-817P-201ENST00000391083 104 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AL356057.2-201ENST00000403318 432 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RNA5SP129-201ENST00000410276 118 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RN7SKP111-201ENST00000410349 271 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RPS12P24-201ENST00000412619 387 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 BX682237.1-201ENST00000415016 335 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 BX842559.1-201ENST00000419615 532 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC018644.1-201ENST00000429934 551 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AL353705.1-201ENST00000433468 480 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AL591212.2-201ENST00000433923 257 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 NDUFA5P4-201ENST00000436704 385 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC007677.1-201ENST00000445757 515 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AL133547.1-201ENST00000448546 220 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC091179.1-201ENST00000461606 579 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RPS4XP13-201ENST00000483219 789 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 RNU6-189P-201ENST00000516120 101 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 ZNF192P1-203ENST00000565888 810 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC113139.1-201ENST00000605049 239 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 AC093831.2-201ENST00000624393 3427 ntBASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CLIP4Q8N3C7 HSPA8P4-201ENST00000511877 1920 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 DEFB108F-201ENST00000344638 222 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 SNORD113-7-201ENST00000363762 77 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 RNU6-715P-201ENST00000365204 103 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 Y_RNA.387-201ENST00000383918 102 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 SNORA16.2-201ENST00000390991 127 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 EIF4E2P1-201ENST00000393781 255 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 YPEL5P1-201ENST00000419731 367 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AL160275.3-201ENST00000423876 471 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AC244505.4-201ENST00000434905 287 ntBASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.07□□□□□ -1.92
CLIP4Q8N3C7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms