Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC021269.2-201ENST00000532318 330 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 AL391261.3-201ENST00000557194 520 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MIR5699-201ENST00000578903 90 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MIR3121-201ENST00000579680 77 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MIR5695-201ENST00000579717 85 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 AL353748.2-201ENST00000622148 471 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MIR6830-201ENST00000636015 70 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MIR6844-201ENST00000637122 62 ntBASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.99□□□□□ -1.61
NPAS3Q8IXF0 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AP005432.1-201ENST00000580891 3485 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 snoU2_19.4-201ENST00000364329 80 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 RNU6-213P-201ENST00000384051 104 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 MIR548A3-201ENST00000385297 97 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 Y_RNA.595-201ENST00000410403 105 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 CYCSP49-201ENST00000420810 319 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 RPS27AP13-201ENST00000498403 237 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 RNU6-1114P-201ENST00000516022 107 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 RNU1-6P-201ENST00000516290 144 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC109810.1-201ENST00000534066 224 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AL161629.2-201ENST00000615347 275 ntBASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.98□□□□□ -1.61
NPAS3Q8IXF0 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 Z95331.1-201ENST00000623075 23112 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC007529.1-201ENST00000418574 2178 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 RNU6-384P-201ENST00000364900 104 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 RNU6-395P-201ENST00000365662 106 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC109327.2-201ENST00000448339 378 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 RPL23AP75-201ENST00000491601 451 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 SNORA31.3-201ENST00000516029 96 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 RNU6-1061P-201ENST00000516530 99 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC133485.4-201ENST00000561835 220 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC138907.4-201ENST00000570107 226 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 TLK1P1-201ENST00000456760 2440 ntBASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NPAS3Q8IXF0 SMG1P6-201ENST00000532337 2930 ntBASIC4.96□□□□□ -1.61
NPAS3Q8IXF0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
NPAS3Q8IXF0 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.61
NPAS3Q8IXF0 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
NPAS3Q8IXF0 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
NPAS3Q8IXF0 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 AC008079.2-201ENST00000623543 20396 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 SNORA72.2-201ENST00000365028 127 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RNU6-541P-201ENST00000384709 110 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RNA5SP213-201ENST00000391031 106 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RNU1-139P-201ENST00000391307 165 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RNU6-1025P-201ENST00000410629 104 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RPL30P3-201ENST00000424262 333 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 AL358472.1-201ENST00000431295 329 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 AL714022.1-201ENST00000439897 151 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 FHP1-201ENST00000442741 703 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 AL353705.4-201ENST00000449661 238 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 U8.19-201ENST00000459095 133 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 Y_RNA.637-201ENST00000459424 114 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 RN7SL558P-201ENST00000497468 299 ntBASIC4.96□□□□□ -1.62
NPAS3Q8IXF0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms