Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC138761.3-201ENST00000579993 334 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC104237.2-201ENST00000612456 443 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 MIR6730-201ENST00000622213 67 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 ZNF519P1-201ENST00000449011 1626 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 SNORD113.2-201ENST00000364166 89 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP515-201ENST00000364570 118 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RNU5E-7P-201ENST00000365290 117 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.356-201ENST00000365475 113 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-1329P-201ENST00000365664 107 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RAB9AP3-201ENST00000412737 573 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 SNORD56-201ENST00000413522 71 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 UBE2V1P4-201ENST00000425374 344 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AL353705.1-201ENST00000433468 480 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RAB9AP1-201ENST00000449393 573 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 RPL23AP45-201ENST00000476406 468 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 FGF7P4-201ENST00000509595 295 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.682-201ENST00000516457 100 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AC109479.2-201ENST00000517842 174 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 COPS8P3-201ENST00000526024 482 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AP001781.1-201ENST00000530977 207 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AC006199.1-201ENST00000548728 219 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
CCDC28AQ8IWP9 MAPK10-322ENST00000641485 4530 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP175-201ENST00000364275 119 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RNU1-64P-201ENST00000365443 163 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 SNORD73A-201ENST00000386062 65 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-1106P-201ENST00000390845 107 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AL360182.1-201ENST00000397433 468 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AL356967.1-201ENST00000406305 431 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC093151.1-201ENST00000427711 313 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 NIPA2P5-201ENST00000452282 464 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RPL12P20-201ENST00000475538 479 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RPL39P5-202ENST00000512505 151 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC008549.1-201ENST00000512900 643 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RAB11AP2-201ENST00000545905 639 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC007151.1-201ENST00000572774 483 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 RPS3AP23-202ENST00000574601 686 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 MIR4790-201ENST00000577799 79 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AL132765.2-201ENST00000610812 351 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC019176.2-201ENST00000611579 315 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 AC009233.1-201ENST00000616477 371 ntBASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC28AQ8IWP9 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-797P-201ENST00000363101 109 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RNU1-132P-201ENST00000364300 164 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-1280P-201ENST00000365211 107 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RNU1-100P-201ENST00000365255 165 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.529-201ENST00000384586 119 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RNU1-101P-201ENST00000391171 127 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 MIR548K-201ENST00000408406 116 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC023141.4-201ENST00000412031 328 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RPL7P37-201ENST00000425095 738 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AP000907.1-201ENST00000428428 510 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 MTND1P17-201ENST00000448961 204 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AL031274.1-201ENST00000450334 232 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC107399.1-201ENST00000451226 265 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC092001.1-201ENST00000453012 261 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RN7SL354P-201ENST00000469282 294 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC096745.1-201ENST00000509945 370 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC092436.3-201ENST00000511788 257 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AP005639.2-201ENST00000527592 928 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AL121821.2-201ENST00000556081 394 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms