Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU1-15P-201ENST00000353977 144 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU6-50P-201ENST00000362356 103 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU6-1309P-201ENST00000363305 108 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP53Q70EK8 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU6-463P-201ENST00000384340 107 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU6-933P-201ENST00000384424 107 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 MIR34A-201ENST00000385130 110 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 SNORD66.1-201ENST00000391230 76 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL513475.1-201ENST00000406602 315 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 U3.42-201ENST00000408746 214 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 CRYBB2P1-203ENST00000415709 538 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RAC1P3-201ENST00000416129 580 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL117339.3-201ENST00000418733 162 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AC004552.1-201ENST00000419089 348 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RBMY1KP-201ENST00000423480 476 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 BX276092.3-201ENST00000424182 230 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RPS15AP10-201ENST00000432472 382 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL159987.2-201ENST00000432754 307 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 SNRPEP4-201ENST00000435815 279 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL356535.1-201ENST00000440335 398 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AL031274.1-201ENST00000450334 232 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RPS26P3-201ENST00000470205 348 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AC090543.2-201ENST00000483963 348 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AC004057.1-201ENST00000485827 348 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.07□□□□□ -1.76
USP53Q70EK8 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RNA5SP154-201ENST00000516193 111 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 RNU6-1282P-201ENST00000516735 96 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 AC018889.1-201ENST00000605372 397 ntBASIC4.07□□□□□ -1.76
USP53Q70EK8 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP53Q70EK8 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USP53Q70EK8 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.07□□□□□ -1.76
USP53Q70EK8 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP53Q70EK8 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.07□□□□□ -1.76
USP53Q70EK8 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
USP53Q70EK8 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.06□□□□□ -1.76
USP53Q70EK8 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 U8.8-201ENST00000365399 135 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RNU6-140P-201ENST00000384566 108 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 MIR325-201ENST00000385260 98 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USP53Q70EK8 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.06□□□□□ -1.76
USP53Q70EK8 MIR548F4-201ENST00000408515 105 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RNA5SP129-201ENST00000410276 118 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RNA5SP104-201ENST00000410989 118 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RPL23AP83-201ENST00000434984 473 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC099799.1-201ENST00000439809 192 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 BTF3P15-201ENST00000455606 336 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RPL9P32-201ENST00000464118 620 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.06□□□□□ -1.76
USP53Q70EK8 RNU6-764P-201ENST00000516396 105 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 RN7SKP289-201ENST00000517244 295 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC109479.2-201ENST00000517842 174 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 GNAI2P1-201ENST00000541815 315 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.06□□□□□ -1.76
USP53Q70EK8 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.06□□□□□ -1.76
USP53Q70EK8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.06□□□□□ -1.76
USP53Q70EK8 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 AC008121.1-201ENST00000603244 268 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AC009314.1-201ENST00000603871 304 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AL161629.2-201ENST00000615347 275 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 AL162373.1-201ENST00000620433 407 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 FP236240.3-201ENST00000623061 327 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 AL133412.1-201ENST00000380194 2992 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.06□□□□□ -1.76
USP53Q70EK8 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.06□□□□□ -1.76
USP53Q70EK8 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP53Q70EK8 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP53Q70EK8 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP53Q70EK8 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP53Q70EK8 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
USP53Q70EK8 RPL9P7-201ENST00000330965 580 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 RNU6-1317P-201ENST00000364582 104 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 RNU6-827P-201ENST00000365553 106 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 DEFB109C-201ENST00000382575 264 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 DEFB109B-201ENST00000382656 264 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 RNU6-217P-201ENST00000384164 104 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 MRPS18CP6-201ENST00000423587 223 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 MTCYBP10-201ENST00000424905 650 ntBASIC4.05□□□□□ -1.76
USP53Q70EK8 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.05□□□□□ -1.76
USP53Q70EK8 AL512844.2-201ENST00000433990 593 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms